Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3027 and GFF3028 are separated by 169 nucleotides GFF3028 and GFF3029 are separated by 16 nucleotides GFF3029 and GFF3030 are separated by 47 nucleotides
GFF3027 - hypothetical protein, at 751,007 to 752,038
GFF3027
GFF3028 - Methanol dehydrogenase [cytochrome c] subunit 2, at 752,208 to 752,516
GFF3028
GFF3029 - Cytochrome c-L, at 752,533 to 753,135
GFF3029
GFF3030 - hypothetical protein, at 753,183 to 754,142
GFF3030
Position (kb) 752
753
754 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 751.593 kb on + strand, within GFF3027 at 751.593 kb on + strand, within GFF3027 at 751.593 kb on + strand, within GFF3027 at 751.594 kb on - strand, within GFF3027 at 751.594 kb on - strand, within GFF3027 at 751.770 kb on + strand, within GFF3027 at 751.771 kb on - strand, within GFF3027 at 751.771 kb on - strand, within GFF3027 at 751.818 kb on + strand, within GFF3027 at 752.207 kb on - strand at 752.207 kb on - strand at 752.237 kb on - strand at 752.237 kb on - strand at 752.264 kb on - strand, within GFF3028 at 752.280 kb on - strand, within GFF3028 at 752.350 kb on + strand, within GFF3028 at 752.370 kb on - strand, within GFF3028 at 752.431 kb on + strand, within GFF3028 at 752.507 kb on + strand at 752.508 kb on - strand at 752.508 kb on - strand at 752.681 kb on + strand, within GFF3029 at 752.681 kb on + strand, within GFF3029 at 752.681 kb on + strand, within GFF3029 at 752.682 kb on - strand, within GFF3029 at 752.738 kb on + strand, within GFF3029 at 752.738 kb on + strand, within GFF3029 at 752.739 kb on - strand, within GFF3029 at 752.739 kb on - strand, within GFF3029 at 752.822 kb on + strand, within GFF3029 at 752.822 kb on + strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.936 kb on + strand, within GFF3029 at 752.937 kb on - strand, within GFF3029 at 752.963 kb on + strand, within GFF3029 at 753.034 kb on - strand, within GFF3029 at 753.051 kb on + strand, within GFF3029 at 753.407 kb on - strand, within GFF3030 at 753.407 kb on - strand, within GFF3030 at 753.496 kb on + strand, within GFF3030 at 753.497 kb on - strand, within GFF3030 at 753.532 kb on + strand, within GFF3030 at 753.533 kb on - strand, within GFF3030 at 753.538 kb on + strand, within GFF3030 at 753.538 kb on + strand, within GFF3030 at 753.556 kb on + strand, within GFF3030 at 753.557 kb on - strand, within GFF3030 at 753.557 kb on - strand, within GFF3030 at 753.688 kb on + strand, within GFF3030 at 753.689 kb on - strand, within GFF3030 at 753.689 kb on - strand, within GFF3030 at 753.689 kb on - strand, within GFF3030 at 753.700 kb on + strand, within GFF3030 at 753.703 kb on + strand, within GFF3030 at 753.703 kb on + strand, within GFF3030 at 753.703 kb on + strand, within GFF3030 at 753.754 kb on - strand, within GFF3030 at 753.754 kb on - strand, within GFF3030 at 753.881 kb on + strand, within GFF3030
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 751,593 + GFF3027 0.57 -1.6 751,593 + GFF3027 0.57 -1.7 751,593 + GFF3027 0.57 -2.2 751,594 - GFF3027 0.57 -0.8 751,594 - GFF3027 0.57 -3.2 751,770 + GFF3027 0.74 -1.0 751,771 - GFF3027 0.74 -1.9 751,771 - GFF3027 0.74 +0.0 751,818 + GFF3027 0.79 -1.8 752,207 - -1.9 752,207 - -1.6 752,237 - -0.6 752,237 - -1.7 752,264 - GFF3028 0.18 -2.2 752,280 - GFF3028 0.23 -3.0 752,350 + GFF3028 0.46 -0.6 752,370 - GFF3028 0.52 -0.6 752,431 + GFF3028 0.72 -1.4 752,507 + -1.5 752,508 - -1.6 752,508 - -4.4 752,681 + GFF3029 0.25 -2.4 752,681 + GFF3029 0.25 -2.1 752,681 + GFF3029 0.25 -1.6 752,682 - GFF3029 0.25 -3.7 752,738 + GFF3029 0.34 -4.0 752,738 + GFF3029 0.34 -1.0 752,739 - GFF3029 0.34 -4.1 752,739 - GFF3029 0.34 -2.6 752,822 + GFF3029 0.48 -1.7 752,822 + GFF3029 0.48 -2.5 752,823 - GFF3029 0.48 -2.3 752,823 - GFF3029 0.48 -3.2 752,823 - GFF3029 0.48 -3.5 752,823 - GFF3029 0.48 -1.9 752,936 + GFF3029 0.67 -1.7 752,937 - GFF3029 0.67 -2.4 752,963 + GFF3029 0.71 -2.3 753,034 - GFF3029 0.83 -1.2 753,051 + GFF3029 0.86 -2.0 753,407 - GFF3030 0.23 -2.1 753,407 - GFF3030 0.23 -2.0 753,496 + GFF3030 0.33 -0.9 753,497 - GFF3030 0.33 -3.4 753,532 + GFF3030 0.36 -3.2 753,533 - GFF3030 0.36 -1.7 753,538 + GFF3030 0.37 -0.3 753,538 + GFF3030 0.37 -1.3 753,556 + GFF3030 0.39 -3.1 753,557 - GFF3030 0.39 -0.9 753,557 - GFF3030 0.39 -2.8 753,688 + GFF3030 0.53 -1.6 753,689 - GFF3030 0.53 -2.1 753,689 - GFF3030 0.53 -1.3 753,689 - GFF3030 0.53 -1.7 753,700 + GFF3030 0.54 -2.3 753,703 + GFF3030 0.54 -1.8 753,703 + GFF3030 0.54 -1.8 753,703 + GFF3030 0.54 -1.6 753,754 - GFF3030 0.59 -3.1 753,754 - GFF3030 0.59 -1.6 753,881 + GFF3030 0.73 -1.6
Or see this region's nucleotide sequence