Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3025 and GFF3026 overlap by 38 nucleotides GFF3026 and GFF3027 overlap by 4 nucleotides GFF3027 and GFF3028 are separated by 169 nucleotides GFF3028 and GFF3029 are separated by 16 nucleotides
GFF3025 - hypothetical protein, at 749,225 to 750,187
GFF3025
GFF3026 - hypothetical protein, at 750,150 to 751,010
GFF3026
GFF3027 - hypothetical protein, at 751,007 to 752,038
GFF3027
GFF3028 - Methanol dehydrogenase [cytochrome c] subunit 2, at 752,208 to 752,516
GFF3028
GFF3029 - Cytochrome c-L, at 752,533 to 753,135
GFF3029
Position (kb) 751
752
753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 750.048 kb on + strand, within GFF3025 at 750.070 kb on - strand, within GFF3025 at 750.152 kb on - strand at 750.218 kb on - strand at 750.748 kb on - strand, within GFF3026 at 751.092 kb on + strand at 751.197 kb on + strand, within GFF3027 at 751.197 kb on + strand, within GFF3027 at 751.197 kb on + strand, within GFF3027 at 751.197 kb on + strand, within GFF3027 at 751.197 kb on + strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.198 kb on - strand, within GFF3027 at 751.257 kb on - strand, within GFF3027 at 751.593 kb on + strand, within GFF3027 at 751.593 kb on + strand, within GFF3027 at 751.593 kb on + strand, within GFF3027 at 751.594 kb on - strand, within GFF3027 at 751.594 kb on - strand, within GFF3027 at 751.770 kb on + strand, within GFF3027 at 751.771 kb on - strand, within GFF3027 at 751.771 kb on - strand, within GFF3027 at 751.818 kb on + strand, within GFF3027 at 752.207 kb on - strand at 752.207 kb on - strand at 752.237 kb on - strand at 752.237 kb on - strand at 752.264 kb on - strand, within GFF3028 at 752.280 kb on - strand, within GFF3028 at 752.350 kb on + strand, within GFF3028 at 752.370 kb on - strand, within GFF3028 at 752.431 kb on + strand, within GFF3028 at 752.507 kb on + strand at 752.508 kb on - strand at 752.508 kb on - strand at 752.681 kb on + strand, within GFF3029 at 752.681 kb on + strand, within GFF3029 at 752.681 kb on + strand, within GFF3029 at 752.682 kb on - strand, within GFF3029 at 752.738 kb on + strand, within GFF3029 at 752.738 kb on + strand, within GFF3029 at 752.739 kb on - strand, within GFF3029 at 752.739 kb on - strand, within GFF3029 at 752.822 kb on + strand, within GFF3029 at 752.822 kb on + strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.823 kb on - strand, within GFF3029 at 752.936 kb on + strand, within GFF3029 at 752.937 kb on - strand, within GFF3029 at 752.963 kb on + strand, within GFF3029 at 753.034 kb on - strand, within GFF3029
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 750,048 + GFF3025 0.85 -2.6 750,070 - GFF3025 0.88 -3.2 750,152 - -3.0 750,218 - -0.3 750,748 - GFF3026 0.69 -2.2 751,092 + -3.0 751,197 + GFF3027 0.18 -0.3 751,197 + GFF3027 0.18 -0.6 751,197 + GFF3027 0.18 -2.1 751,197 + GFF3027 0.18 -0.4 751,197 + GFF3027 0.18 -1.6 751,198 - GFF3027 0.19 -1.2 751,198 - GFF3027 0.19 -1.8 751,198 - GFF3027 0.19 -2.4 751,198 - GFF3027 0.19 -2.7 751,198 - GFF3027 0.19 -2.3 751,198 - GFF3027 0.19 -4.1 751,198 - GFF3027 0.19 -1.8 751,257 - GFF3027 0.24 -2.6 751,593 + GFF3027 0.57 -1.6 751,593 + GFF3027 0.57 -1.7 751,593 + GFF3027 0.57 -2.2 751,594 - GFF3027 0.57 -0.8 751,594 - GFF3027 0.57 -3.2 751,770 + GFF3027 0.74 -1.0 751,771 - GFF3027 0.74 -1.9 751,771 - GFF3027 0.74 +0.0 751,818 + GFF3027 0.79 -1.8 752,207 - -1.9 752,207 - -1.6 752,237 - -0.6 752,237 - -1.7 752,264 - GFF3028 0.18 -2.2 752,280 - GFF3028 0.23 -3.0 752,350 + GFF3028 0.46 -0.6 752,370 - GFF3028 0.52 -0.6 752,431 + GFF3028 0.72 -1.4 752,507 + -1.5 752,508 - -1.6 752,508 - -4.4 752,681 + GFF3029 0.25 -2.4 752,681 + GFF3029 0.25 -2.1 752,681 + GFF3029 0.25 -1.6 752,682 - GFF3029 0.25 -3.7 752,738 + GFF3029 0.34 -4.0 752,738 + GFF3029 0.34 -1.0 752,739 - GFF3029 0.34 -4.1 752,739 - GFF3029 0.34 -2.6 752,822 + GFF3029 0.48 -1.7 752,822 + GFF3029 0.48 -2.5 752,823 - GFF3029 0.48 -2.3 752,823 - GFF3029 0.48 -3.2 752,823 - GFF3029 0.48 -3.5 752,823 - GFF3029 0.48 -1.9 752,936 + GFF3029 0.67 -1.7 752,937 - GFF3029 0.67 -2.4 752,963 + GFF3029 0.71 -2.3 753,034 - GFF3029 0.83 -1.2
Or see this region's nucleotide sequence