Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3013 and GFF3014 overlap by 8 nucleotides GFF3014 and GFF3015 overlap by 4 nucleotides GFF3015 and GFF3016 are separated by 243 nucleotides
GFF3013 - Sulfate/thiosulfate import ATP-binding protein CysA, at 737,720 to 738,463
GFF3013
GFF3014 - hypothetical protein, at 738,456 to 739,442
GFF3014
GFF3015 - High-affinity branched-chain amino acid transport system permease protein LivH, at 739,439 to 740,299
GFF3015
GFF3016 - Leu/Ile/Val-binding protein, at 740,543 to 741,793
GFF3016
Position (kb) 739
740
741 Strain fitness (log2 ratio) -1
0
1
2 at 738.767 kb on - strand, within GFF3014 at 738.775 kb on + strand, within GFF3014 at 738.775 kb on + strand, within GFF3014 at 738.775 kb on + strand, within GFF3014 at 738.776 kb on - strand, within GFF3014 at 738.776 kb on - strand, within GFF3014 at 738.776 kb on - strand, within GFF3014 at 738.847 kb on + strand, within GFF3014 at 738.976 kb on + strand, within GFF3014 at 739.066 kb on + strand, within GFF3014 at 739.243 kb on + strand, within GFF3014 at 739.243 kb on + strand, within GFF3014 at 739.243 kb on + strand, within GFF3014 at 739.244 kb on - strand, within GFF3014 at 739.244 kb on - strand, within GFF3014 at 739.364 kb on - strand at 739.515 kb on + strand at 739.552 kb on - strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 739.569 kb on + strand, within GFF3015 at 740.157 kb on + strand, within GFF3015 at 740.158 kb on - strand, within GFF3015 at 740.158 kb on - strand, within GFF3015 at 740.344 kb on + strand at 740.345 kb on - strand at 740.507 kb on + strand at 740.583 kb on + strand at 740.584 kb on - strand at 740.616 kb on + strand at 740.617 kb on - strand at 740.617 kb on - strand at 740.643 kb on + strand at 740.859 kb on + strand, within GFF3016 at 740.860 kb on - strand, within GFF3016 at 740.874 kb on + strand, within GFF3016 at 740.875 kb on - strand, within GFF3016 at 740.895 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.066 kb on + strand, within GFF3016 at 741.067 kb on - strand, within GFF3016 at 741.067 kb on - strand, within GFF3016 at 741.111 kb on + strand, within GFF3016 at 741.147 kb on + strand, within GFF3016 at 741.147 kb on + strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016 at 741.148 kb on - strand, within GFF3016
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 738,767 - GFF3014 0.32 -1.0 738,775 + GFF3014 0.32 -0.3 738,775 + GFF3014 0.32 +0.1 738,775 + GFF3014 0.32 -0.5 738,776 - GFF3014 0.32 -0.1 738,776 - GFF3014 0.32 +0.3 738,776 - GFF3014 0.32 -0.5 738,847 + GFF3014 0.40 -1.0 738,976 + GFF3014 0.53 +0.1 739,066 + GFF3014 0.62 -0.3 739,243 + GFF3014 0.80 -0.0 739,243 + GFF3014 0.80 +0.4 739,243 + GFF3014 0.80 -1.1 739,244 - GFF3014 0.80 +0.5 739,244 - GFF3014 0.80 -0.3 739,364 - -0.7 739,515 + -0.8 739,552 - GFF3015 0.13 +0.0 739,569 + GFF3015 0.15 +0.0 739,569 + GFF3015 0.15 +0.0 739,569 + GFF3015 0.15 +2.0 740,157 + GFF3015 0.83 +0.2 740,158 - GFF3015 0.84 +1.0 740,158 - GFF3015 0.84 -0.5 740,344 + +0.9 740,345 - +0.2 740,507 + +0.3 740,583 + -0.6 740,584 - +0.6 740,616 + +0.3 740,617 - -0.9 740,617 - +0.4 740,643 + +0.1 740,859 + GFF3016 0.25 -0.8 740,860 - GFF3016 0.25 -0.1 740,874 + GFF3016 0.26 -0.7 740,875 - GFF3016 0.27 +0.3 740,895 + GFF3016 0.28 -0.1 741,066 + GFF3016 0.42 +0.9 741,066 + GFF3016 0.42 -0.7 741,066 + GFF3016 0.42 -0.6 741,067 - GFF3016 0.42 -1.0 741,067 - GFF3016 0.42 -0.8 741,111 + GFF3016 0.45 +1.1 741,147 + GFF3016 0.48 -1.6 741,147 + GFF3016 0.48 -0.9 741,148 - GFF3016 0.48 -0.5 741,148 - GFF3016 0.48 -0.7 741,148 - GFF3016 0.48 +0.3 741,148 - GFF3016 0.48 -1.3 741,148 - GFF3016 0.48 -0.4 741,148 - GFF3016 0.48 +1.3
Or see this region's nucleotide sequence