Strain Fitness in Xanthobacter sp. DMC5 around GFF2989

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2988 and GFF2989 are separated by 10 nucleotidesGFF2989 and GFF2990 are separated by 5 nucleotides GFF2988 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 713,376 to 714,098 GFF2988 GFF2989 - Vitamin B12 import ATP-binding protein BtuD, at 714,109 to 716,100 GFF2989 GFF2990 - High-affinity branched-chain amino acid transport system permease protein LivH, at 716,106 to 717,005 GFF2990 Position (kb) 714 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 713.395 kb on + strandat 713.473 kb on + strand, within GFF2988at 713.473 kb on + strand, within GFF2988at 713.473 kb on + strand, within GFF2988at 713.474 kb on - strand, within GFF2988at 714.141 kb on - strandat 714.319 kb on + strand, within GFF2989at 714.563 kb on + strand, within GFF2989at 714.563 kb on + strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.564 kb on - strand, within GFF2989at 714.725 kb on + strand, within GFF2989at 714.725 kb on + strand, within GFF2989at 714.725 kb on + strand, within GFF2989at 714.725 kb on + strand, within GFF2989at 714.725 kb on + strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 714.726 kb on - strand, within GFF2989at 715.016 kb on + strand, within GFF2989at 715.016 kb on + strand, within GFF2989at 715.016 kb on + strand, within GFF2989at 715.017 kb on - strand, within GFF2989at 715.017 kb on - strand, within GFF2989at 715.019 kb on + strand, within GFF2989at 715.019 kb on + strand, within GFF2989at 715.019 kb on + strand, within GFF2989at 715.019 kb on + strand, within GFF2989at 715.019 kb on + strand, within GFF2989at 715.061 kb on + strand, within GFF2989at 715.062 kb on - strand, within GFF2989at 715.211 kb on + strand, within GFF2989at 715.362 kb on + strand, within GFF2989at 715.363 kb on - strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.364 kb on + strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.365 kb on - strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.445 kb on + strand, within GFF2989at 715.446 kb on - strand, within GFF2989at 715.527 kb on + strand, within GFF2989at 715.528 kb on - strand, within GFF2989at 715.574 kb on + strand, within GFF2989at 715.575 kb on - strand, within GFF2989at 715.577 kb on + strand, within GFF2989at 715.577 kb on + strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.578 kb on - strand, within GFF2989at 715.580 kb on + strand, within GFF2989at 715.581 kb on - strand, within GFF2989at 715.763 kb on + strand, within GFF2989at 715.764 kb on - strand, within GFF2989at 715.889 kb on + strand, within GFF2989at 715.890 kb on - strand, within GFF2989at 715.890 kb on - strand, within GFF2989at 715.938 kb on + strandat 715.941 kb on - strandat 716.009 kb on + strandat 716.009 kb on + strandat 716.010 kb on - strandat 716.013 kb on - strandat 716.013 kb on - strandat 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.212 kb on + strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.213 kb on - strand, within GFF2990at 716.215 kb on + strand, within GFF2990at 716.216 kb on - strand, within GFF2990at 716.314 kb on - strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.803 kb on + strand, within GFF2990at 716.804 kb on - strand, within GFF2990at 716.953 kb on + strandat 716.953 kb on + strandat 716.954 kb on - strandat 716.954 kb on - strandat 716.954 kb on - strandat 717.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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713,395 + -0.0
713,473 + GFF2988 0.13 +0.0
713,473 + GFF2988 0.13 +0.3
713,473 + GFF2988 0.13 +0.4
713,474 - GFF2988 0.14 +1.6
714,141 - -0.4
714,319 + GFF2989 0.11 +1.2
714,563 + GFF2989 0.23 -0.3
714,563 + GFF2989 0.23 +0.4
714,564 - GFF2989 0.23 -0.8
714,564 - GFF2989 0.23 -0.1
714,564 - GFF2989 0.23 -0.4
714,564 - GFF2989 0.23 +0.2
714,564 - GFF2989 0.23 -1.5
714,564 - GFF2989 0.23 -2.9
714,725 + GFF2989 0.31 +1.1
714,725 + GFF2989 0.31 -1.5
714,725 + GFF2989 0.31 +0.7
714,725 + GFF2989 0.31 +0.6
714,725 + GFF2989 0.31 +1.6
714,726 - GFF2989 0.31 -0.1
714,726 - GFF2989 0.31 +0.0
714,726 - GFF2989 0.31 -0.6
714,726 - GFF2989 0.31 -1.2
714,726 - GFF2989 0.31 -1.8
714,726 - GFF2989 0.31 +2.0
715,016 + GFF2989 0.46 +1.5
715,016 + GFF2989 0.46 +0.1
715,016 + GFF2989 0.46 +0.0
715,017 - GFF2989 0.46 +1.0
715,017 - GFF2989 0.46 +0.7
715,019 + GFF2989 0.46 -0.3
715,019 + GFF2989 0.46 +0.4
715,019 + GFF2989 0.46 -0.0
715,019 + GFF2989 0.46 -1.0
715,019 + GFF2989 0.46 -0.4
715,061 + GFF2989 0.48 -0.1
715,062 - GFF2989 0.48 +0.0
715,211 + GFF2989 0.55 +0.0
715,362 + GFF2989 0.63 -1.0
715,363 - GFF2989 0.63 +0.4
715,364 + GFF2989 0.63 +1.0
715,364 + GFF2989 0.63 -1.2
715,364 + GFF2989 0.63 -0.2
715,365 - GFF2989 0.63 -1.0
715,365 - GFF2989 0.63 -1.1
715,365 - GFF2989 0.63 -1.9
715,365 - GFF2989 0.63 -1.3
715,445 + GFF2989 0.67 +0.5
715,445 + GFF2989 0.67 -1.2
715,445 + GFF2989 0.67 -0.2
715,446 - GFF2989 0.67 +1.0
715,527 + GFF2989 0.71 +0.0
715,528 - GFF2989 0.71 +0.0
715,574 + GFF2989 0.74 -1.0
715,575 - GFF2989 0.74 -1.2
715,577 + GFF2989 0.74 +0.4
715,577 + GFF2989 0.74 +0.1
715,578 - GFF2989 0.74 +1.3
715,578 - GFF2989 0.74 +0.2
715,578 - GFF2989 0.74 -0.5
715,578 - GFF2989 0.74 -0.2
715,578 - GFF2989 0.74 +0.8
715,580 + GFF2989 0.74 -0.6
715,581 - GFF2989 0.74 +1.2
715,763 + GFF2989 0.83 +0.2
715,764 - GFF2989 0.83 +0.7
715,889 + GFF2989 0.89 -0.7
715,890 - GFF2989 0.89 -1.3
715,890 - GFF2989 0.89 -1.3
715,938 + +0.6
715,941 - -0.2
716,009 + -0.6
716,009 + -0.6
716,010 - -0.8
716,013 - -1.5
716,013 - -1.3
716,212 + GFF2990 0.12 -1.4
716,212 + GFF2990 0.12 -0.8
716,212 + GFF2990 0.12 -2.3
716,212 + GFF2990 0.12 +0.8
716,212 + GFF2990 0.12 +0.4
716,212 + GFF2990 0.12 +0.8
716,213 - GFF2990 0.12 -1.8
716,213 - GFF2990 0.12 +0.2
716,213 - GFF2990 0.12 -0.8
716,215 + GFF2990 0.12 -0.4
716,216 - GFF2990 0.12 +2.0
716,314 - GFF2990 0.23 +0.3
716,803 + GFF2990 0.77 -1.0
716,803 + GFF2990 0.77 -0.2
716,803 + GFF2990 0.77 +1.4
716,804 - GFF2990 0.78 -0.2
716,953 + -2.6
716,953 + +0.2
716,954 - -0.4
716,954 - -0.6
716,954 - +0.5
717,001 + +0.4

Or see this region's nucleotide sequence