Strain Fitness in Xanthobacter sp. DMC5 around GFF2971

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2970 and GFF2971 are separated by 78 nucleotidesGFF2971 and GFF2972 are separated by 451 nucleotides GFF2970 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 695,523 to 696,716 GFF2970 GFF2971 - Nitrilase, at 696,795 to 697,868 GFF2971 GFF2972 - ECF RNA polymerase sigma factor SigF, at 698,320 to 698,865 GFF2972 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1at 695.821 kb on + strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 696.148 kb on + strand, within GFF2970at 696.149 kb on - strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.301 kb on - strand, within GFF2970at 696.352 kb on + strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.388 kb on + strand, within GFF2970at 696.490 kb on + strand, within GFF2970at 696.490 kb on + strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.518 kb on + strand, within GFF2970at 696.518 kb on + strand, within GFF2970at 696.519 kb on - strand, within GFF2970at 696.519 kb on - strand, within GFF2970at 696.886 kb on + strandat 696.943 kb on + strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.946 kb on + strand, within GFF2971at 696.947 kb on - strand, within GFF2971at 697.006 kb on + strand, within GFF2971at 697.307 kb on + strand, within GFF2971at 697.307 kb on + strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.453 kb on + strand, within GFF2971at 697.453 kb on + strand, within GFF2971at 697.454 kb on - strand, within GFF2971at 697.454 kb on - strand, within GFF2971at 697.460 kb on + strand, within GFF2971at 697.460 kb on + strand, within GFF2971at 697.520 kb on - strand, within GFF2971at 697.856 kb on - strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.901 kb on - strandat 697.968 kb on + strandat 697.969 kb on - strandat 697.987 kb on + strandat 697.987 kb on + strandat 697.988 kb on - strandat 697.988 kb on - strandat 698.169 kb on + strandat 698.275 kb on - strandat 698.275 kb on - strandat 698.315 kb on + strandat 698.316 kb on - strandat 698.316 kb on - strandat 698.387 kb on - strand, within GFF2972

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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695,821 + GFF2970 0.25 +0.2
695,852 - GFF2970 0.28 +1.2
695,852 - GFF2970 0.28 +0.3
695,852 - GFF2970 0.28 -1.1
695,852 - GFF2970 0.28 +1.0
696,148 + GFF2970 0.52 +0.9
696,149 - GFF2970 0.52 +0.6
696,295 + GFF2970 0.65 -2.0
696,295 + GFF2970 0.65 +0.4
696,295 + GFF2970 0.65 -0.1
696,301 - GFF2970 0.65 +0.9
696,352 + GFF2970 0.69 -0.5
696,353 - GFF2970 0.70 +1.0
696,353 - GFF2970 0.70 +1.5
696,353 - GFF2970 0.70 -0.1
696,353 - GFF2970 0.70 +0.1
696,353 - GFF2970 0.70 +0.5
696,388 + GFF2970 0.72 -0.4
696,490 + GFF2970 0.81 -1.8
696,490 + GFF2970 0.81 -0.2
696,491 - GFF2970 0.81 -0.5
696,491 - GFF2970 0.81 -1.1
696,491 - GFF2970 0.81 +0.7
696,496 + GFF2970 0.81 -0.3
696,496 + GFF2970 0.81 +1.2
696,496 + GFF2970 0.81 -0.3
696,496 + GFF2970 0.81 -0.5
696,497 - GFF2970 0.82 -0.2
696,497 - GFF2970 0.82 +0.2
696,497 - GFF2970 0.82 +0.2
696,497 - GFF2970 0.82 -0.5
696,497 - GFF2970 0.82 -0.5
696,497 - GFF2970 0.82 +0.1
696,518 + GFF2970 0.83 -0.6
696,518 + GFF2970 0.83 -0.1
696,519 - GFF2970 0.83 -1.7
696,519 - GFF2970 0.83 -0.6
696,886 + -0.2
696,943 + GFF2971 0.14 +0.0
696,944 - GFF2971 0.14 -0.9
696,944 - GFF2971 0.14 -1.4
696,944 - GFF2971 0.14 +0.3
696,944 - GFF2971 0.14 -0.2
696,946 + GFF2971 0.14 -0.0
696,947 - GFF2971 0.14 +0.7
697,006 + GFF2971 0.20 -0.2
697,307 + GFF2971 0.48 -1.0
697,307 + GFF2971 0.48 -2.4
697,308 - GFF2971 0.48 -0.6
697,308 - GFF2971 0.48 -0.8
697,308 - GFF2971 0.48 -0.1
697,308 - GFF2971 0.48 -0.9
697,308 - GFF2971 0.48 +1.0
697,308 - GFF2971 0.48 +1.1
697,308 - GFF2971 0.48 -0.6
697,453 + GFF2971 0.61 -2.1
697,453 + GFF2971 0.61 +0.5
697,454 - GFF2971 0.61 +0.5
697,454 - GFF2971 0.61 -0.9
697,460 + GFF2971 0.62 +0.0
697,460 + GFF2971 0.62 +0.0
697,520 - GFF2971 0.68 +1.5
697,856 - -0.7
697,856 - +0.1
697,856 - -1.0
697,901 - -0.4
697,968 + -0.3
697,969 - -0.2
697,987 + -0.7
697,987 + -0.5
697,988 - +1.0
697,988 - -2.6
698,169 + -0.5
698,275 - -1.6
698,275 - -1.6
698,315 + -1.1
698,316 - -0.4
698,316 - +0.2
698,387 - GFF2972 0.12 +0.4

Or see this region's nucleotide sequence