Strain Fitness in Xanthobacter sp. DMC5 around GFF2970

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2969 and GFF2970 are separated by 273 nucleotidesGFF2970 and GFF2971 are separated by 78 nucleotides GFF2969 - High-affinity branched-chain amino acid transport system permease protein LivH, at 694,329 to 695,249 GFF2969 GFF2970 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 695,523 to 696,716 GFF2970 GFF2971 - Nitrilase, at 696,795 to 697,868 GFF2971 Position (kb) 695 696 697Strain fitness (log2 ratio) -2 -1 0 1at 694.585 kb on + strand, within GFF2969at 694.585 kb on + strand, within GFF2969at 694.585 kb on + strand, within GFF2969at 694.585 kb on + strand, within GFF2969at 695.137 kb on + strand, within GFF2969at 695.191 kb on + strandat 695.192 kb on - strandat 695.192 kb on - strandat 695.224 kb on + strandat 695.225 kb on - strandat 695.569 kb on + strandat 695.587 kb on + strandat 695.588 kb on - strandat 695.588 kb on - strandat 695.588 kb on - strandat 695.614 kb on + strandat 695.615 kb on - strandat 695.615 kb on - strandat 695.615 kb on - strandat 695.615 kb on - strandat 695.680 kb on + strand, within GFF2970at 695.681 kb on - strand, within GFF2970at 695.821 kb on + strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 695.852 kb on - strand, within GFF2970at 696.148 kb on + strand, within GFF2970at 696.149 kb on - strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.295 kb on + strand, within GFF2970at 696.301 kb on - strand, within GFF2970at 696.352 kb on + strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.353 kb on - strand, within GFF2970at 696.388 kb on + strand, within GFF2970at 696.490 kb on + strand, within GFF2970at 696.490 kb on + strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.491 kb on - strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.496 kb on + strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.497 kb on - strand, within GFF2970at 696.518 kb on + strand, within GFF2970at 696.518 kb on + strand, within GFF2970at 696.519 kb on - strand, within GFF2970at 696.519 kb on - strand, within GFF2970at 696.886 kb on + strandat 696.943 kb on + strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.944 kb on - strand, within GFF2971at 696.946 kb on + strand, within GFF2971at 696.947 kb on - strand, within GFF2971at 697.006 kb on + strand, within GFF2971at 697.307 kb on + strand, within GFF2971at 697.307 kb on + strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.308 kb on - strand, within GFF2971at 697.453 kb on + strand, within GFF2971at 697.453 kb on + strand, within GFF2971at 697.454 kb on - strand, within GFF2971at 697.454 kb on - strand, within GFF2971at 697.460 kb on + strand, within GFF2971at 697.460 kb on + strand, within GFF2971at 697.520 kb on - strand, within GFF2971

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
694,585 + GFF2969 0.28 +0.2
694,585 + GFF2969 0.28 +0.7
694,585 + GFF2969 0.28 +1.0
694,585 + GFF2969 0.28 -0.8
695,137 + GFF2969 0.88 -0.4
695,191 + -1.0
695,192 - +0.0
695,192 - -0.6
695,224 + -0.3
695,225 - +0.2
695,569 + -0.7
695,587 + +1.3
695,588 - -0.9
695,588 - -0.1
695,588 - +0.2
695,614 + +0.2
695,615 - +0.3
695,615 - +0.3
695,615 - +0.5
695,615 - -0.6
695,680 + GFF2970 0.13 +0.7
695,681 - GFF2970 0.13 +1.6
695,821 + GFF2970 0.25 +0.2
695,852 - GFF2970 0.28 +1.2
695,852 - GFF2970 0.28 +0.3
695,852 - GFF2970 0.28 -1.1
695,852 - GFF2970 0.28 +1.0
696,148 + GFF2970 0.52 +0.9
696,149 - GFF2970 0.52 +0.6
696,295 + GFF2970 0.65 -2.0
696,295 + GFF2970 0.65 +0.4
696,295 + GFF2970 0.65 -0.1
696,301 - GFF2970 0.65 +0.9
696,352 + GFF2970 0.69 -0.5
696,353 - GFF2970 0.70 +1.0
696,353 - GFF2970 0.70 +1.5
696,353 - GFF2970 0.70 -0.1
696,353 - GFF2970 0.70 +0.1
696,353 - GFF2970 0.70 +0.5
696,388 + GFF2970 0.72 -0.4
696,490 + GFF2970 0.81 -1.8
696,490 + GFF2970 0.81 -0.2
696,491 - GFF2970 0.81 -0.5
696,491 - GFF2970 0.81 -1.1
696,491 - GFF2970 0.81 +0.7
696,496 + GFF2970 0.81 -0.3
696,496 + GFF2970 0.81 +1.2
696,496 + GFF2970 0.81 -0.3
696,496 + GFF2970 0.81 -0.5
696,497 - GFF2970 0.82 -0.2
696,497 - GFF2970 0.82 +0.2
696,497 - GFF2970 0.82 +0.2
696,497 - GFF2970 0.82 -0.5
696,497 - GFF2970 0.82 -0.5
696,497 - GFF2970 0.82 +0.1
696,518 + GFF2970 0.83 -0.6
696,518 + GFF2970 0.83 -0.1
696,519 - GFF2970 0.83 -1.7
696,519 - GFF2970 0.83 -0.6
696,886 + -0.2
696,943 + GFF2971 0.14 +0.0
696,944 - GFF2971 0.14 -0.9
696,944 - GFF2971 0.14 -1.4
696,944 - GFF2971 0.14 +0.3
696,944 - GFF2971 0.14 -0.2
696,946 + GFF2971 0.14 -0.0
696,947 - GFF2971 0.14 +0.7
697,006 + GFF2971 0.20 -0.2
697,307 + GFF2971 0.48 -1.0
697,307 + GFF2971 0.48 -2.4
697,308 - GFF2971 0.48 -0.6
697,308 - GFF2971 0.48 -0.8
697,308 - GFF2971 0.48 -0.1
697,308 - GFF2971 0.48 -0.9
697,308 - GFF2971 0.48 +1.0
697,308 - GFF2971 0.48 +1.1
697,308 - GFF2971 0.48 -0.6
697,453 + GFF2971 0.61 -2.1
697,453 + GFF2971 0.61 +0.5
697,454 - GFF2971 0.61 +0.5
697,454 - GFF2971 0.61 -0.9
697,460 + GFF2971 0.62 +0.0
697,460 + GFF2971 0.62 +0.0
697,520 - GFF2971 0.68 +1.5

Or see this region's nucleotide sequence