Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2952 and GFF2953 are separated by 185 nucleotides GFF2953 and GFF2954 are separated by 67 nucleotides GFF2954 and GFF2955 overlap by 4 nucleotides
GFF2952 - Thioredoxin 2, at 678,007 to 678,495
GFF2952
GFF2953 - hypothetical protein, at 678,681 to 678,980
GFF2953
GFF2954 - Taurine import ATP-binding protein TauB, at 679,048 to 679,878
GFF2954
GFF2955 - Riboflavin-binding protein RibY, at 679,875 to 680,903
GFF2955
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.120 kb on - strand, within GFF2952 at 678.146 kb on + strand, within GFF2952 at 678.294 kb on - strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952 at 678.581 kb on - strand at 678.846 kb on + strand, within GFF2953 at 678.990 kb on - strand at 678.994 kb on + strand at 678.994 kb on + strand at 679.100 kb on + strand at 679.101 kb on - strand at 679.163 kb on + strand, within GFF2954 at 679.163 kb on + strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.274 kb on + strand, within GFF2954 at 679.781 kb on + strand, within GFF2954 at 679.781 kb on + strand, within GFF2954 at 679.782 kb on - strand, within GFF2954 at 679.782 kb on - strand, within GFF2954 at 679.782 kb on - strand, within GFF2954 at 679.782 kb on - strand, within GFF2954 at 679.900 kb on + strand at 679.901 kb on - strand at 679.901 kb on - strand at 679.942 kb on + strand at 679.943 kb on - strand at 680.027 kb on - strand, within GFF2955 at 680.041 kb on + strand, within GFF2955 at 680.086 kb on + strand, within GFF2955 at 680.087 kb on - strand, within GFF2955 at 680.087 kb on - strand, within GFF2955 at 680.251 kb on + strand, within GFF2955 at 680.251 kb on + strand, within GFF2955 at 680.282 kb on + strand, within GFF2955 at 680.422 kb on + strand, within GFF2955 at 680.704 kb on + strand, within GFF2955 at 680.705 kb on - strand, within GFF2955 at 680.707 kb on + strand, within GFF2955 at 680.749 kb on + strand, within GFF2955 at 680.750 kb on - strand, within GFF2955 at 680.750 kb on - strand, within GFF2955 at 680.755 kb on + strand, within GFF2955 at 680.755 kb on + strand, within GFF2955 at 680.756 kb on - strand, within GFF2955 at 680.795 kb on + strand, within GFF2955
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 678,120 - GFF2952 0.23 -2.0 678,146 + GFF2952 0.28 +0.9 678,294 - GFF2952 0.59 +0.9 678,306 + GFF2952 0.61 -0.5 678,306 + GFF2952 0.61 +0.2 678,306 + GFF2952 0.61 +1.1 678,306 + GFF2952 0.61 -0.8 678,306 + GFF2952 0.61 +0.5 678,307 - GFF2952 0.61 +0.0 678,307 - GFF2952 0.61 -0.0 678,307 - GFF2952 0.61 +0.0 678,424 - GFF2952 0.85 -0.9 678,424 - GFF2952 0.85 +0.3 678,581 - -0.2 678,846 + GFF2953 0.55 -1.1 678,990 - -0.5 678,994 + +0.4 678,994 + -0.6 679,100 + +0.2 679,101 - -0.3 679,163 + GFF2954 0.14 +0.7 679,163 + GFF2954 0.14 +2.0 679,164 - GFF2954 0.14 -0.4 679,164 - GFF2954 0.14 +0.5 679,164 - GFF2954 0.14 -0.9 679,274 + GFF2954 0.27 +0.0 679,781 + GFF2954 0.88 +0.2 679,781 + GFF2954 0.88 +0.6 679,782 - GFF2954 0.88 +0.7 679,782 - GFF2954 0.88 -0.9 679,782 - GFF2954 0.88 -0.8 679,782 - GFF2954 0.88 -0.5 679,900 + -0.5 679,901 - -0.6 679,901 - -0.1 679,942 + -0.8 679,943 - -0.3 680,027 - GFF2955 0.15 -0.5 680,041 + GFF2955 0.16 -0.1 680,086 + GFF2955 0.21 +0.0 680,087 - GFF2955 0.21 +0.7 680,087 - GFF2955 0.21 +1.0 680,251 + GFF2955 0.37 -0.2 680,251 + GFF2955 0.37 +1.1 680,282 + GFF2955 0.40 +0.9 680,422 + GFF2955 0.53 -1.1 680,704 + GFF2955 0.81 -0.1 680,705 - GFF2955 0.81 +0.7 680,707 + GFF2955 0.81 +0.5 680,749 + GFF2955 0.85 +0.8 680,750 - GFF2955 0.85 -1.4 680,750 - GFF2955 0.85 -1.4 680,755 + GFF2955 0.86 -0.9 680,755 + GFF2955 0.86 -0.8 680,756 - GFF2955 0.86 -0.5 680,795 + GFF2955 0.89 +0.5
Or see this region's nucleotide sequence