Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2941 and GFF2942 overlap by 4 nucleotides GFF2942 and GFF2943 are separated by 174 nucleotides GFF2943 and GFF2944 are separated by 59 nucleotides GFF2944 and GFF2945 are separated by 180 nucleotides
GFF2941 - hypothetical protein, at 663,828 to 665,177
GFF2941
GFF2942 - putative HTH-type transcriptional regulator YfiR, at 665,174 to 665,824
GFF2942
GFF2943 - hypothetical protein, at 665,999 to 666,466
GFF2943
GFF2944 - hypothetical protein, at 666,526 to 667,239
GFF2944
GFF2945 - protein kinase UbiB, at 667,420 to 668,766
GFF2945
Position (kb) 665
666
667 Strain fitness (log2 ratio) -1
0
1 at 665.491 kb on + strand, within GFF2942 at 665.492 kb on - strand, within GFF2942 at 665.637 kb on + strand, within GFF2942 at 665.637 kb on + strand, within GFF2942 at 665.849 kb on + strand at 666.347 kb on + strand, within GFF2943 at 666.348 kb on - strand, within GFF2943 at 666.348 kb on - strand, within GFF2943 at 666.401 kb on + strand, within GFF2943 at 666.494 kb on + strand at 666.494 kb on + strand at 666.494 kb on + strand at 666.495 kb on - strand at 666.495 kb on - strand at 666.495 kb on - strand at 666.742 kb on + strand, within GFF2944 at 666.742 kb on + strand, within GFF2944 at 666.820 kb on + strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.821 kb on - strand, within GFF2944 at 666.871 kb on + strand, within GFF2944 at 666.871 kb on + strand, within GFF2944 at 666.872 kb on - strand, within GFF2944 at 666.961 kb on + strand, within GFF2944 at 666.961 kb on + strand, within GFF2944 at 667.422 kb on - strand at 667.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 665,491 + GFF2942 0.49 -0.0 665,492 - GFF2942 0.49 -0.4 665,637 + GFF2942 0.71 +0.3 665,637 + GFF2942 0.71 -0.8 665,849 + +0.1 666,347 + GFF2943 0.74 +0.2 666,348 - GFF2943 0.75 -1.5 666,348 - GFF2943 0.75 -1.0 666,401 + GFF2943 0.86 -0.4 666,494 + +0.1 666,494 + +0.3 666,494 + -0.2 666,495 - +0.7 666,495 - -0.5 666,495 - +0.7 666,742 + GFF2944 0.30 -0.0 666,742 + GFF2944 0.30 -0.3 666,820 + GFF2944 0.41 +0.0 666,821 - GFF2944 0.41 +0.0 666,821 - GFF2944 0.41 +1.2 666,821 - GFF2944 0.41 -0.1 666,821 - GFF2944 0.41 -1.5 666,871 + GFF2944 0.48 +0.0 666,871 + GFF2944 0.48 +0.7 666,872 - GFF2944 0.48 -0.3 666,961 + GFF2944 0.61 -0.3 666,961 + GFF2944 0.61 -1.2 667,422 - -0.5 667,422 - +0.2
Or see this region's nucleotide sequence