Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2933 and GFF2934 are separated by 305 nucleotides GFF2934 and GFF2935 are separated by 18 nucleotides GFF2935 and GFF2936 are separated by 44 nucleotides
GFF2933 - Glutamine synthetase, at 654,496 to 655,530
GFF2933
GFF2934 - Trans-aconitate 2-methyltransferase, at 655,836 to 656,609
GFF2934
GFF2935 - D-methionine-binding lipoprotein MetQ, at 656,628 to 657,407
GFF2935
GFF2936 - D-methionine transport system permease protein MetI, at 657,452 to 658,138
GFF2936
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1 at 654.839 kb on - strand, within GFF2933 at 654.839 kb on - strand, within GFF2933 at 654.899 kb on - strand, within GFF2933 at 654.901 kb on + strand, within GFF2933 at 654.901 kb on + strand, within GFF2933 at 654.902 kb on - strand, within GFF2933 at 654.902 kb on - strand, within GFF2933 at 654.903 kb on + strand, within GFF2933 at 654.903 kb on + strand, within GFF2933 at 655.117 kb on + strand, within GFF2933 at 655.118 kb on - strand, within GFF2933 at 655.204 kb on + strand, within GFF2933 at 655.205 kb on - strand, within GFF2933 at 655.205 kb on - strand, within GFF2933 at 655.288 kb on + strand, within GFF2933 at 655.414 kb on + strand, within GFF2933 at 655.463 kb on - strand at 655.685 kb on + strand at 655.685 kb on + strand at 655.686 kb on - strand at 655.686 kb on - strand at 655.768 kb on - strand at 655.769 kb on + strand at 655.769 kb on + strand at 655.770 kb on - strand at 655.770 kb on - strand at 655.863 kb on + strand at 655.863 kb on + strand at 655.864 kb on - strand at 656.130 kb on + strand, within GFF2934 at 656.349 kb on + strand, within GFF2934 at 656.349 kb on + strand, within GFF2934 at 656.350 kb on - strand, within GFF2934 at 656.352 kb on + strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.405 kb on + strand, within GFF2934 at 656.405 kb on + strand, within GFF2934 at 656.517 kb on + strand, within GFF2934 at 656.517 kb on + strand, within GFF2934 at 656.518 kb on - strand, within GFF2934 at 656.541 kb on + strand at 656.607 kb on + strand at 656.608 kb on - strand at 656.608 kb on - strand at 656.608 kb on - strand at 656.695 kb on + strand at 656.696 kb on - strand at 656.696 kb on - strand at 656.696 kb on - strand at 656.764 kb on + strand, within GFF2935 at 656.764 kb on + strand, within GFF2935 at 656.765 kb on - strand, within GFF2935 at 656.830 kb on + strand, within GFF2935 at 657.076 kb on + strand, within GFF2935 at 657.076 kb on + strand, within GFF2935 at 657.166 kb on + strand, within GFF2935 at 657.166 kb on + strand, within GFF2935 at 657.232 kb on + strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.296 kb on - strand, within GFF2935
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 654,839 - GFF2933 0.33 -0.6 654,839 - GFF2933 0.33 -0.7 654,899 - GFF2933 0.39 -0.3 654,901 + GFF2933 0.39 +0.2 654,901 + GFF2933 0.39 -0.3 654,902 - GFF2933 0.39 -1.1 654,902 - GFF2933 0.39 -0.5 654,903 + GFF2933 0.39 -0.2 654,903 + GFF2933 0.39 -0.1 655,117 + GFF2933 0.60 +0.2 655,118 - GFF2933 0.60 +0.0 655,204 + GFF2933 0.68 +0.2 655,205 - GFF2933 0.69 +1.5 655,205 - GFF2933 0.69 -0.6 655,288 + GFF2933 0.77 -0.3 655,414 + GFF2933 0.89 -2.0 655,463 - +1.3 655,685 + -1.1 655,685 + -0.9 655,686 - -1.1 655,686 - -0.4 655,768 - +0.5 655,769 + +1.0 655,769 + +0.8 655,770 - -0.8 655,770 - -0.3 655,863 + +0.6 655,863 + -0.1 655,864 - +1.0 656,130 + GFF2934 0.38 -0.8 656,349 + GFF2934 0.66 +1.0 656,349 + GFF2934 0.66 -0.1 656,350 - GFF2934 0.66 -1.0 656,352 + GFF2934 0.67 +0.5 656,353 - GFF2934 0.67 +0.3 656,353 - GFF2934 0.67 +0.9 656,353 - GFF2934 0.67 -0.6 656,403 + GFF2934 0.73 +0.4 656,403 + GFF2934 0.73 -0.3 656,403 + GFF2934 0.73 +0.0 656,403 + GFF2934 0.73 +0.1 656,403 + GFF2934 0.73 +0.1 656,403 + GFF2934 0.73 -1.1 656,404 - GFF2934 0.73 -0.3 656,404 - GFF2934 0.73 -0.3 656,404 - GFF2934 0.73 -0.7 656,404 - GFF2934 0.73 +0.4 656,405 + GFF2934 0.74 +0.8 656,405 + GFF2934 0.74 -0.7 656,517 + GFF2934 0.88 +0.3 656,517 + GFF2934 0.88 +1.0 656,518 - GFF2934 0.88 +0.9 656,541 + -0.4 656,607 + -0.7 656,608 - -0.8 656,608 - -0.3 656,608 - -0.4 656,695 + -0.0 656,696 - -0.4 656,696 - +0.9 656,696 - -0.2 656,764 + GFF2935 0.17 -0.5 656,764 + GFF2935 0.17 +1.0 656,765 - GFF2935 0.18 +0.2 656,830 + GFF2935 0.26 -0.3 657,076 + GFF2935 0.57 +0.9 657,076 + GFF2935 0.57 +1.2 657,166 + GFF2935 0.69 -0.1 657,166 + GFF2935 0.69 +0.7 657,232 + GFF2935 0.77 +1.6 657,233 - GFF2935 0.78 +0.0 657,233 - GFF2935 0.78 +0.8 657,233 - GFF2935 0.78 -0.2 657,296 - GFF2935 0.86 +1.7
Or see this region's nucleotide sequence