Strain Fitness in Xanthobacter sp. DMC5 around GFF2910

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2909 and GFF2910 are separated by 70 nucleotidesGFF2910 and GFF2911 are separated by 32 nucleotides GFF2909 - Porin B, at 626,984 to 628,465 GFF2909 GFF2910 - hypothetical protein, at 628,536 to 629,066 GFF2910 GFF2911 - hypothetical protein, at 629,099 to 630,073 GFF2911 Position (kb) 628 629 630Strain fitness (log2 ratio) -1 0 1 2at 627.794 kb on + strand, within GFF2909at 627.794 kb on + strand, within GFF2909at 627.794 kb on + strand, within GFF2909at 627.794 kb on + strand, within GFF2909at 627.795 kb on - strand, within GFF2909at 627.795 kb on - strand, within GFF2909at 627.795 kb on - strand, within GFF2909at 627.848 kb on + strand, within GFF2909at 627.848 kb on + strand, within GFF2909at 627.848 kb on + strand, within GFF2909at 627.848 kb on + strand, within GFF2909at 627.855 kb on - strand, within GFF2909at 627.941 kb on + strand, within GFF2909at 627.942 kb on - strand, within GFF2909at 627.942 kb on - strand, within GFF2909at 628.010 kb on + strand, within GFF2909at 628.011 kb on - strand, within GFF2909at 628.011 kb on - strand, within GFF2909at 628.011 kb on - strand, within GFF2909at 628.019 kb on + strand, within GFF2909at 628.019 kb on + strand, within GFF2909at 628.019 kb on + strand, within GFF2909at 628.020 kb on - strand, within GFF2909at 628.020 kb on - strand, within GFF2909at 628.130 kb on + strand, within GFF2909at 628.244 kb on + strand, within GFF2909at 628.245 kb on - strand, within GFF2909at 628.245 kb on - strand, within GFF2909at 628.245 kb on - strand, within GFF2909at 628.256 kb on + strand, within GFF2909at 628.257 kb on - strand, within GFF2909at 628.268 kb on + strand, within GFF2909at 628.268 kb on + strand, within GFF2909at 628.268 kb on + strand, within GFF2909at 628.268 kb on + strand, within GFF2909at 628.269 kb on - strand, within GFF2909at 628.269 kb on - strand, within GFF2909at 628.271 kb on + strand, within GFF2909at 628.272 kb on - strand, within GFF2909at 628.272 kb on - strand, within GFF2909at 628.310 kb on + strand, within GFF2909at 628.311 kb on - strand, within GFF2909at 628.311 kb on - strand, within GFF2909at 628.359 kb on - strandat 628.681 kb on + strand, within GFF2910at 628.681 kb on + strand, within GFF2910at 628.681 kb on + strand, within GFF2910at 628.681 kb on + strand, within GFF2910at 628.682 kb on - strand, within GFF2910at 628.682 kb on - strand, within GFF2910at 628.682 kb on - strand, within GFF2910at 628.682 kb on - strand, within GFF2910at 628.822 kb on + strand, within GFF2910at 628.823 kb on - strand, within GFF2910at 628.972 kb on + strand, within GFF2910at 628.972 kb on + strand, within GFF2910at 628.972 kb on + strand, within GFF2910at 628.973 kb on - strand, within GFF2910at 629.044 kb on - strandat 629.070 kb on + strandat 629.071 kb on - strandat 629.071 kb on - strandat 629.100 kb on + strandat 629.100 kb on + strandat 629.100 kb on + strandat 629.101 kb on - strandat 629.101 kb on - strandat 629.101 kb on - strandat 629.316 kb on + strand, within GFF2911at 629.317 kb on - strand, within GFF2911at 629.317 kb on - strand, within GFF2911at 629.376 kb on + strand, within GFF2911at 629.376 kb on + strand, within GFF2911at 629.376 kb on + strand, within GFF2911at 629.376 kb on + strand, within GFF2911at 629.377 kb on - strand, within GFF2911at 629.395 kb on - strand, within GFF2911at 629.688 kb on + strand, within GFF2911at 629.688 kb on + strand, within GFF2911at 629.688 kb on + strand, within GFF2911at 629.689 kb on - strand, within GFF2911at 629.721 kb on + strand, within GFF2911at 629.722 kb on - strand, within GFF2911at 629.722 kb on - strand, within GFF2911at 629.722 kb on - strand, within GFF2911at 629.722 kb on - strand, within GFF2911at 629.722 kb on - strand, within GFF2911at 629.769 kb on + strand, within GFF2911at 629.769 kb on + strand, within GFF2911at 629.865 kb on + strand, within GFF2911at 629.866 kb on - strand, within GFF2911at 629.866 kb on - strand, within GFF2911at 629.866 kb on - strand, within GFF2911at 629.866 kb on - strand, within GFF2911at 629.866 kb on - strand, within GFF2911

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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627,794 + GFF2909 0.55 -1.5
627,794 + GFF2909 0.55 +1.0
627,794 + GFF2909 0.55 +0.7
627,794 + GFF2909 0.55 +0.2
627,795 - GFF2909 0.55 +0.2
627,795 - GFF2909 0.55 +0.2
627,795 - GFF2909 0.55 +0.1
627,848 + GFF2909 0.58 +0.7
627,848 + GFF2909 0.58 -0.8
627,848 + GFF2909 0.58 +0.5
627,848 + GFF2909 0.58 +0.1
627,855 - GFF2909 0.59 -1.4
627,941 + GFF2909 0.65 -0.4
627,942 - GFF2909 0.65 +0.5
627,942 - GFF2909 0.65 -1.1
628,010 + GFF2909 0.69 -0.5
628,011 - GFF2909 0.69 +0.5
628,011 - GFF2909 0.69 +0.1
628,011 - GFF2909 0.69 -0.2
628,019 + GFF2909 0.70 -0.2
628,019 + GFF2909 0.70 -0.5
628,019 + GFF2909 0.70 -1.5
628,020 - GFF2909 0.70 -0.5
628,020 - GFF2909 0.70 +0.9
628,130 + GFF2909 0.77 -0.8
628,244 + GFF2909 0.85 +0.3
628,245 - GFF2909 0.85 +0.4
628,245 - GFF2909 0.85 -1.0
628,245 - GFF2909 0.85 -0.5
628,256 + GFF2909 0.86 +1.0
628,257 - GFF2909 0.86 -0.4
628,268 + GFF2909 0.87 +0.4
628,268 + GFF2909 0.87 -1.2
628,268 + GFF2909 0.87 -1.1
628,268 + GFF2909 0.87 +0.6
628,269 - GFF2909 0.87 +0.5
628,269 - GFF2909 0.87 +0.8
628,271 + GFF2909 0.87 +2.2
628,272 - GFF2909 0.87 +1.2
628,272 - GFF2909 0.87 +1.0
628,310 + GFF2909 0.89 +0.0
628,311 - GFF2909 0.90 +0.5
628,311 - GFF2909 0.90 +0.5
628,359 - +1.9
628,681 + GFF2910 0.27 +0.4
628,681 + GFF2910 0.27 +0.3
628,681 + GFF2910 0.27 -0.5
628,681 + GFF2910 0.27 +0.4
628,682 - GFF2910 0.27 +0.6
628,682 - GFF2910 0.27 +1.5
628,682 - GFF2910 0.27 -0.4
628,682 - GFF2910 0.27 -0.0
628,822 + GFF2910 0.54 +0.4
628,823 - GFF2910 0.54 +1.5
628,972 + GFF2910 0.82 +0.1
628,972 + GFF2910 0.82 +0.5
628,972 + GFF2910 0.82 -0.7
628,973 - GFF2910 0.82 +0.9
629,044 - -0.9
629,070 + -1.5
629,071 - -0.0
629,071 - -0.4
629,100 + +0.9
629,100 + -1.7
629,100 + -0.8
629,101 - -0.3
629,101 - +0.5
629,101 - +0.5
629,316 + GFF2911 0.22 +0.4
629,317 - GFF2911 0.22 +0.4
629,317 - GFF2911 0.22 +1.4
629,376 + GFF2911 0.28 -0.3
629,376 + GFF2911 0.28 -0.5
629,376 + GFF2911 0.28 -0.1
629,376 + GFF2911 0.28 +0.6
629,377 - GFF2911 0.29 -0.6
629,395 - GFF2911 0.30 +0.1
629,688 + GFF2911 0.60 +1.0
629,688 + GFF2911 0.60 +0.3
629,688 + GFF2911 0.60 +0.2
629,689 - GFF2911 0.61 -0.4
629,721 + GFF2911 0.64 +1.2
629,722 - GFF2911 0.64 +2.3
629,722 - GFF2911 0.64 -1.1
629,722 - GFF2911 0.64 -0.4
629,722 - GFF2911 0.64 +0.3
629,722 - GFF2911 0.64 -0.8
629,769 + GFF2911 0.69 +0.6
629,769 + GFF2911 0.69 +0.4
629,865 + GFF2911 0.79 -0.4
629,866 - GFF2911 0.79 -0.1
629,866 - GFF2911 0.79 -0.7
629,866 - GFF2911 0.79 +0.4
629,866 - GFF2911 0.79 -1.7
629,866 - GFF2911 0.79 -0.8

Or see this region's nucleotide sequence