Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2907 and GFF2908 are separated by 22 nucleotides GFF2908 and GFF2909 are separated by 409 nucleotides
GFF2907 - HTH-type transcriptional regulator DmlR, at 624,480 to 625,400
GFF2907
GFF2908 - hypothetical protein, at 625,423 to 626,574
GFF2908
GFF2909 - Porin B, at 626,984 to 628,465
GFF2909
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.438 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.458 kb on + strand at 624.681 kb on + strand, within GFF2907 at 624.681 kb on + strand, within GFF2907 at 626.006 kb on + strand, within GFF2908 at 626.016 kb on - strand, within GFF2908 at 626.016 kb on - strand, within GFF2908 at 626.030 kb on + strand, within GFF2908 at 626.031 kb on - strand, within GFF2908 at 626.031 kb on - strand, within GFF2908 at 626.031 kb on - strand, within GFF2908 at 626.204 kb on + strand, within GFF2908 at 626.204 kb on + strand, within GFF2908 at 626.204 kb on + strand, within GFF2908 at 626.205 kb on - strand, within GFF2908 at 626.205 kb on - strand, within GFF2908 at 626.205 kb on - strand, within GFF2908 at 626.205 kb on - strand, within GFF2908 at 626.205 kb on - strand, within GFF2908 at 626.318 kb on + strand, within GFF2908 at 626.319 kb on - strand, within GFF2908 at 626.641 kb on + strand at 626.641 kb on + strand at 626.642 kb on - strand at 626.645 kb on + strand at 626.980 kb on - strand at 627.063 kb on - strand at 627.272 kb on + strand, within GFF2909 at 627.272 kb on + strand, within GFF2909 at 627.272 kb on + strand, within GFF2909 at 627.272 kb on + strand, within GFF2909 at 627.273 kb on - strand, within GFF2909 at 627.273 kb on - strand, within GFF2909 at 627.273 kb on - strand, within GFF2909 at 627.273 kb on - strand, within GFF2909 at 627.273 kb on - strand, within GFF2909 at 627.274 kb on + strand, within GFF2909 at 627.326 kb on + strand, within GFF2909 at 627.327 kb on - strand, within GFF2909 at 627.328 kb on + strand, within GFF2909 at 627.444 kb on - strand, within GFF2909 at 627.510 kb on - strand, within GFF2909
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 624,438 + +0.6 624,458 + -0.8 624,458 + -0.0 624,458 + +1.2 624,458 + -0.7 624,681 + GFF2907 0.22 +0.1 624,681 + GFF2907 0.22 +0.5 626,006 + GFF2908 0.51 -0.2 626,016 - GFF2908 0.51 -0.3 626,016 - GFF2908 0.51 +0.0 626,030 + GFF2908 0.53 -1.1 626,031 - GFF2908 0.53 -0.2 626,031 - GFF2908 0.53 +0.0 626,031 - GFF2908 0.53 +0.5 626,204 + GFF2908 0.68 +0.3 626,204 + GFF2908 0.68 -0.4 626,204 + GFF2908 0.68 -0.2 626,205 - GFF2908 0.68 +0.2 626,205 - GFF2908 0.68 -0.4 626,205 - GFF2908 0.68 -1.8 626,205 - GFF2908 0.68 -0.6 626,205 - GFF2908 0.68 -0.4 626,318 + GFF2908 0.78 -1.4 626,319 - GFF2908 0.78 -1.3 626,641 + +1.2 626,641 + -0.8 626,642 - +0.3 626,645 + -0.2 626,980 - -1.1 627,063 - +1.0 627,272 + GFF2909 0.19 +2.7 627,272 + GFF2909 0.19 +1.7 627,272 + GFF2909 0.19 +0.0 627,272 + GFF2909 0.19 +0.7 627,273 - GFF2909 0.20 -0.2 627,273 - GFF2909 0.20 +0.6 627,273 - GFF2909 0.20 +0.0 627,273 - GFF2909 0.20 +1.5 627,273 - GFF2909 0.20 +1.0 627,274 + GFF2909 0.20 +0.8 627,326 + GFF2909 0.23 +0.4 627,327 - GFF2909 0.23 +2.5 627,328 + GFF2909 0.23 +1.2 627,444 - GFF2909 0.31 +0.0 627,510 - GFF2909 0.35 -0.8
Or see this region's nucleotide sequence