Strain Fitness in Xanthobacter sp. DMC5 around GFF2905

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2903 and GFF2904 are separated by 8 nucleotidesGFF2904 and GFF2905 are separated by 10 nucleotidesGFF2905 and GFF2906 are separated by 414 nucleotides GFF2903 - Bicarbonate transport ATP-binding protein CmpD, at 620,119 to 620,976 GFF2903 GFF2904 - Putative aliphatic sulfonates transport permease protein SsuC, at 620,985 to 621,806 GFF2904 GFF2905 - hypothetical protein, at 621,817 to 622,788 GFF2905 GFF2906 - Inner membrane transport protein YdhP, at 623,203 to 624,375 GFF2906 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1at 621.109 kb on + strand, within GFF2904at 621.146 kb on + strand, within GFF2904at 621.223 kb on + strand, within GFF2904at 621.223 kb on + strand, within GFF2904at 621.224 kb on - strand, within GFF2904at 621.224 kb on - strand, within GFF2904at 621.224 kb on - strand, within GFF2904at 621.263 kb on + strand, within GFF2904at 621.263 kb on + strand, within GFF2904at 621.264 kb on - strand, within GFF2904at 621.301 kb on + strand, within GFF2904at 621.301 kb on + strand, within GFF2904at 621.301 kb on + strand, within GFF2904at 621.302 kb on - strand, within GFF2904at 621.302 kb on - strand, within GFF2904at 621.302 kb on - strand, within GFF2904at 621.302 kb on - strand, within GFF2904at 621.425 kb on + strand, within GFF2904at 621.425 kb on + strand, within GFF2904at 621.426 kb on - strand, within GFF2904at 621.427 kb on + strand, within GFF2904at 621.427 kb on + strand, within GFF2904at 621.427 kb on + strand, within GFF2904at 621.427 kb on + strand, within GFF2904at 621.427 kb on + strand, within GFF2904at 621.428 kb on - strand, within GFF2904at 621.428 kb on - strand, within GFF2904at 621.475 kb on + strand, within GFF2904at 621.475 kb on + strand, within GFF2904at 621.476 kb on - strand, within GFF2904at 621.481 kb on + strand, within GFF2904at 621.481 kb on + strand, within GFF2904at 621.482 kb on - strand, within GFF2904at 621.482 kb on - strand, within GFF2904at 621.911 kb on + strandat 621.968 kb on + strand, within GFF2905at 621.969 kb on - strand, within GFF2905at 622.133 kb on + strand, within GFF2905at 622.133 kb on + strand, within GFF2905at 622.187 kb on + strand, within GFF2905at 622.188 kb on - strand, within GFF2905at 622.311 kb on - strand, within GFF2905at 622.311 kb on - strand, within GFF2905at 622.323 kb on + strand, within GFF2905at 622.323 kb on + strand, within GFF2905at 622.324 kb on - strand, within GFF2905at 622.491 kb on + strand, within GFF2905at 622.493 kb on + strand, within GFF2905at 622.494 kb on - strand, within GFF2905at 622.652 kb on + strand, within GFF2905at 622.653 kb on - strand, within GFF2905at 623.049 kb on - strandat 623.060 kb on - strandat 623.312 kb on + strandat 623.373 kb on + strand, within GFF2906at 623.385 kb on + strand, within GFF2906at 623.386 kb on - strand, within GFF2906at 623.639 kb on + strand, within GFF2906at 623.640 kb on - strand, within GFF2906at 623.706 kb on + strand, within GFF2906at 623.706 kb on + strand, within GFF2906at 623.706 kb on + strand, within GFF2906at 623.707 kb on - strand, within GFF2906at 623.708 kb on + strand, within GFF2906at 623.708 kb on + strand, within GFF2906at 623.708 kb on + strand, within GFF2906at 623.708 kb on + strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906at 623.709 kb on - strand, within GFF2906

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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621,109 + GFF2904 0.15 +0.1
621,146 + GFF2904 0.20 -0.3
621,223 + GFF2904 0.29 +1.1
621,223 + GFF2904 0.29 -1.4
621,224 - GFF2904 0.29 -1.2
621,224 - GFF2904 0.29 -0.5
621,224 - GFF2904 0.29 +1.0
621,263 + GFF2904 0.34 -0.6
621,263 + GFF2904 0.34 +0.5
621,264 - GFF2904 0.34 +0.8
621,301 + GFF2904 0.38 -0.1
621,301 + GFF2904 0.38 -0.0
621,301 + GFF2904 0.38 +1.2
621,302 - GFF2904 0.39 +0.3
621,302 - GFF2904 0.39 -0.3
621,302 - GFF2904 0.39 -1.1
621,302 - GFF2904 0.39 -0.1
621,425 + GFF2904 0.54 -0.3
621,425 + GFF2904 0.54 -0.3
621,426 - GFF2904 0.54 -0.6
621,427 + GFF2904 0.54 -0.1
621,427 + GFF2904 0.54 -0.6
621,427 + GFF2904 0.54 +0.9
621,427 + GFF2904 0.54 -0.9
621,427 + GFF2904 0.54 +0.4
621,428 - GFF2904 0.54 +0.5
621,428 - GFF2904 0.54 +0.5
621,475 + GFF2904 0.60 -0.3
621,475 + GFF2904 0.60 -0.4
621,476 - GFF2904 0.60 -0.1
621,481 + GFF2904 0.60 -0.5
621,481 + GFF2904 0.60 -0.7
621,482 - GFF2904 0.60 -0.0
621,482 - GFF2904 0.60 -0.5
621,911 + +1.0
621,968 + GFF2905 0.16 +0.0
621,969 - GFF2905 0.16 +0.0
622,133 + GFF2905 0.33 +0.8
622,133 + GFF2905 0.33 -0.8
622,187 + GFF2905 0.38 -0.2
622,188 - GFF2905 0.38 +0.1
622,311 - GFF2905 0.51 -0.3
622,311 - GFF2905 0.51 -0.3
622,323 + GFF2905 0.52 -0.8
622,323 + GFF2905 0.52 -0.3
622,324 - GFF2905 0.52 -0.2
622,491 + GFF2905 0.69 -0.8
622,493 + GFF2905 0.70 +0.2
622,494 - GFF2905 0.70 -0.3
622,652 + GFF2905 0.86 +0.2
622,653 - GFF2905 0.86 -0.9
623,049 - +0.4
623,060 - -1.0
623,312 + -2.7
623,373 + GFF2906 0.14 +0.4
623,385 + GFF2906 0.16 -0.2
623,386 - GFF2906 0.16 -0.3
623,639 + GFF2906 0.37 -0.5
623,640 - GFF2906 0.37 +0.3
623,706 + GFF2906 0.43 -0.2
623,706 + GFF2906 0.43 -0.0
623,706 + GFF2906 0.43 +0.0
623,707 - GFF2906 0.43 -0.5
623,708 + GFF2906 0.43 -1.1
623,708 + GFF2906 0.43 -0.6
623,708 + GFF2906 0.43 -0.9
623,708 + GFF2906 0.43 +0.6
623,709 - GFF2906 0.43 -0.5
623,709 - GFF2906 0.43 -0.5
623,709 - GFF2906 0.43 -0.8
623,709 - GFF2906 0.43 -2.0
623,709 - GFF2906 0.43 -0.3
623,709 - GFF2906 0.43 +0.5
623,709 - GFF2906 0.43 -0.3

Or see this region's nucleotide sequence