Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2890 and GFF2891 overlap by 4 nucleotides GFF2891 and GFF2892 are separated by 100 nucleotides GFF2892 and GFF2893 are separated by 34 nucleotides
GFF2890 - High-affinity branched-chain amino acid transport system permease protein LivH, at 603,940 to 604,989
GFF2890
GFF2891 - High-affinity branched-chain amino acid transport system permease protein LivH, at 604,986 to 605,858
GFF2891
GFF2892 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 605,959 to 607,119
GFF2892
GFF2893 - hypothetical protein, at 607,154 to 608,368
GFF2893
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -1
0
1
2 at 605.089 kb on + strand, within GFF2891 at 605.089 kb on + strand, within GFF2891 at 605.089 kb on + strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.227 kb on + strand, within GFF2891 at 605.227 kb on + strand, within GFF2891 at 605.228 kb on - strand, within GFF2891 at 605.228 kb on - strand, within GFF2891 at 605.293 kb on + strand, within GFF2891 at 605.294 kb on - strand, within GFF2891 at 605.294 kb on - strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.393 kb on - strand, within GFF2891 at 605.443 kb on + strand, within GFF2891 at 605.443 kb on + strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.731 kb on + strand, within GFF2891 at 605.731 kb on + strand, within GFF2891 at 605.732 kb on - strand, within GFF2891 at 605.732 kb on - strand, within GFF2891 at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.807 kb on - strand at 605.807 kb on - strand at 605.807 kb on - strand at 606.011 kb on + strand at 606.011 kb on + strand at 606.011 kb on + strand at 606.012 kb on - strand at 606.012 kb on - strand at 606.012 kb on - strand at 606.012 kb on - strand at 606.183 kb on - strand, within GFF2892 at 606.183 kb on - strand, within GFF2892 at 606.183 kb on - strand, within GFF2892 at 606.248 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 607.374 kb on + strand, within GFF2893 at 607.649 kb on + strand, within GFF2893 at 607.661 kb on + strand, within GFF2893
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 605,089 + GFF2891 0.12 -0.2 605,089 + GFF2891 0.12 -0.3 605,089 + GFF2891 0.12 -0.5 605,090 - GFF2891 0.12 +0.3 605,090 - GFF2891 0.12 +0.4 605,090 - GFF2891 0.12 +1.0 605,090 - GFF2891 0.12 -1.5 605,227 + GFF2891 0.28 +0.4 605,227 + GFF2891 0.28 -0.1 605,228 - GFF2891 0.28 +0.3 605,228 - GFF2891 0.28 +0.7 605,293 + GFF2891 0.35 +0.5 605,294 - GFF2891 0.35 -0.8 605,294 - GFF2891 0.35 -0.0 605,392 + GFF2891 0.47 -0.6 605,392 + GFF2891 0.47 +0.0 605,392 + GFF2891 0.47 -0.1 605,392 + GFF2891 0.47 +0.3 605,393 - GFF2891 0.47 +0.1 605,443 + GFF2891 0.52 +0.4 605,443 + GFF2891 0.52 +0.3 605,444 - GFF2891 0.52 -0.2 605,444 - GFF2891 0.52 -0.6 605,444 - GFF2891 0.52 +0.1 605,444 - GFF2891 0.52 +0.3 605,707 + GFF2891 0.83 -1.5 605,707 + GFF2891 0.83 +0.2 605,707 + GFF2891 0.83 +0.3 605,707 + GFF2891 0.83 +0.6 605,707 + GFF2891 0.83 -0.3 605,708 - GFF2891 0.83 -1.3 605,708 - GFF2891 0.83 -0.4 605,708 - GFF2891 0.83 +0.0 605,708 - GFF2891 0.83 +0.2 605,708 - GFF2891 0.83 +0.9 605,708 - GFF2891 0.83 -0.3 605,731 + GFF2891 0.85 +0.6 605,731 + GFF2891 0.85 +0.1 605,732 - GFF2891 0.85 -0.3 605,732 - GFF2891 0.85 -1.1 605,806 + +0.2 605,806 + -0.5 605,806 + +0.3 605,806 + -0.2 605,806 + +0.6 605,806 + -0.8 605,807 - +0.1 605,807 - -0.7 605,807 - +0.8 606,011 + +0.1 606,011 + +0.8 606,011 + +0.1 606,012 - +0.3 606,012 - +0.0 606,012 - -0.1 606,012 - +0.2 606,183 - GFF2892 0.19 +0.0 606,183 - GFF2892 0.19 +0.5 606,183 - GFF2892 0.19 -1.2 606,248 + GFF2892 0.25 -0.3 606,770 + GFF2892 0.70 -1.1 606,770 + GFF2892 0.70 -0.5 606,770 + GFF2892 0.70 -0.4 606,770 + GFF2892 0.70 +0.6 606,986 + GFF2892 0.88 +2.0 606,986 + GFF2892 0.88 +0.0 606,986 + GFF2892 0.88 +0.5 606,987 - GFF2892 0.89 -0.3 606,987 - GFF2892 0.89 +0.3 606,987 - GFF2892 0.89 -0.7 607,374 + GFF2893 0.18 +0.8 607,649 + GFF2893 0.41 +0.9 607,661 + GFF2893 0.42 -0.5
Or see this region's nucleotide sequence