Strain Fitness in Xanthobacter sp. DMC5 around GFF2887

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2886 and GFF2887 are separated by 141 nucleotidesGFF2887 and GFF2888 are separated by 60 nucleotidesGFF2888 and GFF2889 overlap by 8 nucleotides GFF2886 - hypothetical protein, at 600,037 to 600,855 GFF2886 GFF2887 - hypothetical protein, at 600,997 to 602,361 GFF2887 GFF2888 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 602,422 to 603,126 GFF2888 GFF2889 - Lipopolysaccharide export system ATP-binding protein LptB, at 603,119 to 603,943 GFF2889 Position (kb) 600 601 602 603Strain fitness (log2 ratio) -2 -1 0 1at 600.089 kb on + strandat 600.092 kb on + strandat 600.092 kb on + strandat 600.093 kb on - strandat 600.093 kb on - strandat 600.222 kb on - strand, within GFF2886at 600.252 kb on - strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.553 kb on + strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.853 kb on + strandat 600.854 kb on - strandat 600.861 kb on - strandat 600.973 kb on + strandat 600.973 kb on + strandat 601.056 kb on + strandat 601.056 kb on + strandat 601.116 kb on + strandat 601.219 kb on + strand, within GFF2887at 601.219 kb on + strand, within GFF2887at 601.220 kb on - strand, within GFF2887at 601.262 kb on - strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.606 kb on + strand, within GFF2887at 601.606 kb on + strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.654 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.687 kb on + strand, within GFF2887at 601.688 kb on - strand, within GFF2887at 601.688 kb on - strand, within GFF2887at 601.770 kb on - strand, within GFF2887at 601.790 kb on - strand, within GFF2887at 601.790 kb on - strand, within GFF2887at 601.806 kb on + strand, within GFF2887at 601.806 kb on + strand, within GFF2887at 601.807 kb on - strand, within GFF2887at 602.028 kb on + strand, within GFF2887at 602.270 kb on - strandat 602.435 kb on + strandat 602.435 kb on + strandat 602.436 kb on - strandat 602.436 kb on - strandat 602.506 kb on + strand, within GFF2888at 602.507 kb on - strand, within GFF2888at 602.507 kb on - strand, within GFF2888at 602.507 kb on - strand, within GFF2888at 602.514 kb on - strand, within GFF2888at 602.514 kb on - strand, within GFF2888at 602.519 kb on + strand, within GFF2888at 602.611 kb on - strand, within GFF2888at 602.772 kb on + strand, within GFF2888at 602.773 kb on - strand, within GFF2888at 602.773 kb on - strand, within GFF2888at 602.773 kb on - strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.774 kb on + strand, within GFF2888at 602.775 kb on - strand, within GFF2888at 602.775 kb on - strand, within GFF2888at 602.786 kb on + strand, within GFF2888at 602.787 kb on - strand, within GFF2888at 602.822 kb on + strand, within GFF2888at 602.823 kb on - strand, within GFF2888at 602.823 kb on - strand, within GFF2888at 602.823 kb on - strand, within GFF2888at 602.823 kb on - strand, within GFF2888at 603.095 kb on + strandat 603.096 kb on - strandat 603.171 kb on + strandat 603.172 kb on - strandat 603.172 kb on - strandat 603.172 kb on - strandat 603.172 kb on - strandat 603.172 kb on - strandat 603.237 kb on + strand, within GFF2889at 603.237 kb on + strand, within GFF2889at 603.238 kb on - strand, within GFF2889

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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600,089 + +0.8
600,092 + -2.0
600,092 + -0.5
600,093 - +0.2
600,093 - -0.2
600,222 - GFF2886 0.23 -0.1
600,252 - GFF2886 0.26 -0.5
600,280 + GFF2886 0.30 +0.0
600,280 + GFF2886 0.30 -0.8
600,280 + GFF2886 0.30 +0.5
600,280 + GFF2886 0.30 +0.0
600,280 + GFF2886 0.30 -1.1
600,280 + GFF2886 0.30 -0.7
600,281 - GFF2886 0.30 +1.3
600,281 - GFF2886 0.30 +0.7
600,553 + GFF2886 0.63 +1.3
600,554 - GFF2886 0.63 +0.8
600,554 - GFF2886 0.63 -1.1
600,637 + GFF2886 0.73 +0.3
600,637 + GFF2886 0.73 +0.6
600,637 + GFF2886 0.73 +0.7
600,638 - GFF2886 0.73 -0.5
600,638 - GFF2886 0.73 -0.6
600,638 - GFF2886 0.73 +0.0
600,638 - GFF2886 0.73 -1.1
600,638 - GFF2886 0.73 -0.1
600,853 + +0.2
600,854 - -0.2
600,861 - -0.0
600,973 + -0.4
600,973 + -0.1
601,056 + +0.5
601,056 + +0.6
601,116 + +0.3
601,219 + GFF2887 0.16 +0.2
601,219 + GFF2887 0.16 -0.7
601,220 - GFF2887 0.16 -0.4
601,262 - GFF2887 0.19 +0.3
601,564 + GFF2887 0.42 +0.0
601,564 + GFF2887 0.42 -0.3
601,564 + GFF2887 0.42 +0.8
601,606 + GFF2887 0.45 -0.8
601,606 + GFF2887 0.45 +0.8
601,607 - GFF2887 0.45 +0.7
601,607 - GFF2887 0.45 +0.6
601,607 - GFF2887 0.45 -0.1
601,654 + GFF2887 0.48 -0.3
601,672 + GFF2887 0.49 -0.6
601,672 + GFF2887 0.49 -0.2
601,672 + GFF2887 0.49 +0.9
601,673 - GFF2887 0.50 -0.5
601,673 - GFF2887 0.50 -0.7
601,673 - GFF2887 0.50 -1.0
601,673 - GFF2887 0.50 -0.8
601,673 - GFF2887 0.50 -0.3
601,687 + GFF2887 0.51 +1.2
601,688 - GFF2887 0.51 -0.4
601,688 - GFF2887 0.51 +0.8
601,770 - GFF2887 0.57 -0.1
601,790 - GFF2887 0.58 +0.3
601,790 - GFF2887 0.58 -0.1
601,806 + GFF2887 0.59 +0.3
601,806 + GFF2887 0.59 -0.0
601,807 - GFF2887 0.59 +0.2
602,028 + GFF2887 0.76 -0.2
602,270 - -0.1
602,435 + -0.2
602,435 + +1.2
602,436 - +1.0
602,436 - +0.4
602,506 + GFF2888 0.12 +0.7
602,507 - GFF2888 0.12 -0.1
602,507 - GFF2888 0.12 -1.1
602,507 - GFF2888 0.12 -1.0
602,514 - GFF2888 0.13 -0.0
602,514 - GFF2888 0.13 +0.0
602,519 + GFF2888 0.14 +0.1
602,611 - GFF2888 0.27 -0.8
602,772 + GFF2888 0.50 -1.1
602,773 - GFF2888 0.50 +0.2
602,773 - GFF2888 0.50 -0.2
602,773 - GFF2888 0.50 -0.1
602,774 + GFF2888 0.50 +0.0
602,774 + GFF2888 0.50 +0.5
602,774 + GFF2888 0.50 +1.0
602,774 + GFF2888 0.50 +0.6
602,774 + GFF2888 0.50 -1.0
602,774 + GFF2888 0.50 +0.8
602,775 - GFF2888 0.50 +0.9
602,775 - GFF2888 0.50 -0.3
602,786 + GFF2888 0.52 -0.3
602,787 - GFF2888 0.52 +0.3
602,822 + GFF2888 0.57 -0.1
602,823 - GFF2888 0.57 -0.9
602,823 - GFF2888 0.57 +1.5
602,823 - GFF2888 0.57 -1.7
602,823 - GFF2888 0.57 -0.5
603,095 + -0.7
603,096 - -0.9
603,171 + +0.9
603,172 - -0.1
603,172 - -1.3
603,172 - -0.7
603,172 - -1.8
603,172 - -0.5
603,237 + GFF2889 0.14 -0.3
603,237 + GFF2889 0.14 +0.8
603,238 - GFF2889 0.14 +0.9

Or see this region's nucleotide sequence