Strain Fitness in Xanthobacter sp. DMC5 around GFF2885

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2883 and GFF2884 are separated by 64 nucleotidesGFF2884 and GFF2885 are separated by 137 nucleotidesGFF2885 and GFF2886 are separated by 104 nucleotides GFF2883 - hypothetical protein, at 598,259 to 598,630 GFF2883 GFF2884 - hypothetical protein, at 598,695 to 598,979 GFF2884 GFF2885 - hypothetical protein, at 599,117 to 599,932 GFF2885 GFF2886 - hypothetical protein, at 600,037 to 600,855 GFF2886 Position (kb) 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 598.126 kb on + strandat 598.212 kb on + strandat 598.212 kb on + strandat 598.217 kb on + strandat 598.289 kb on - strandat 598.522 kb on + strand, within GFF2883at 598.523 kb on - strand, within GFF2883at 598.523 kb on - strand, within GFF2883at 598.527 kb on - strand, within GFF2883at 598.553 kb on + strand, within GFF2883at 598.553 kb on + strand, within GFF2883at 598.553 kb on + strand, within GFF2883at 598.554 kb on - strand, within GFF2883at 598.554 kb on - strand, within GFF2883at 598.554 kb on - strand, within GFF2883at 598.554 kb on - strand, within GFF2883at 598.554 kb on - strand, within GFF2883at 598.626 kb on - strandat 598.984 kb on + strandat 599.070 kb on + strandat 599.146 kb on + strandat 599.272 kb on - strand, within GFF2885at 599.272 kb on - strand, within GFF2885at 599.289 kb on + strand, within GFF2885at 599.289 kb on + strand, within GFF2885at 599.314 kb on - strand, within GFF2885at 599.356 kb on - strand, within GFF2885at 599.356 kb on - strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.368 kb on - strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.449 kb on - strand, within GFF2885at 599.487 kb on + strand, within GFF2885at 599.487 kb on + strand, within GFF2885at 599.488 kb on - strand, within GFF2885at 599.604 kb on + strand, within GFF2885at 599.604 kb on + strand, within GFF2885at 599.605 kb on - strand, within GFF2885at 599.784 kb on + strand, within GFF2885at 599.811 kb on - strand, within GFF2885at 599.927 kb on + strandat 599.927 kb on + strandat 599.927 kb on + strandat 600.089 kb on + strandat 600.092 kb on + strandat 600.092 kb on + strandat 600.093 kb on - strandat 600.093 kb on - strandat 600.222 kb on - strand, within GFF2886at 600.252 kb on - strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.553 kb on + strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.853 kb on + strandat 600.854 kb on - strandat 600.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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598,126 + -0.5
598,212 + +0.6
598,212 + +0.5
598,217 + +1.2
598,289 - -0.4
598,522 + GFF2883 0.71 -0.7
598,523 - GFF2883 0.71 +0.7
598,523 - GFF2883 0.71 -0.7
598,527 - GFF2883 0.72 -1.3
598,553 + GFF2883 0.79 -0.4
598,553 + GFF2883 0.79 +0.3
598,553 + GFF2883 0.79 -0.1
598,554 - GFF2883 0.79 -0.4
598,554 - GFF2883 0.79 +0.4
598,554 - GFF2883 0.79 +0.2
598,554 - GFF2883 0.79 -0.8
598,554 - GFF2883 0.79 -0.0
598,626 - -1.1
598,984 + -0.1
599,070 + -1.8
599,146 + -0.3
599,272 - GFF2885 0.19 -0.9
599,272 - GFF2885 0.19 +0.5
599,289 + GFF2885 0.21 -0.5
599,289 + GFF2885 0.21 -0.1
599,314 - GFF2885 0.24 +0.1
599,356 - GFF2885 0.29 +0.9
599,356 - GFF2885 0.29 +0.4
599,367 + GFF2885 0.31 +0.0
599,367 + GFF2885 0.31 +0.6
599,367 + GFF2885 0.31 -0.3
599,368 - GFF2885 0.31 +0.6
599,448 + GFF2885 0.41 +1.3
599,448 + GFF2885 0.41 +0.4
599,448 + GFF2885 0.41 -0.0
599,448 + GFF2885 0.41 -0.3
599,449 - GFF2885 0.41 +2.3
599,487 + GFF2885 0.45 -0.7
599,487 + GFF2885 0.45 +0.5
599,488 - GFF2885 0.45 +0.5
599,604 + GFF2885 0.60 -0.1
599,604 + GFF2885 0.60 +2.3
599,605 - GFF2885 0.60 -0.3
599,784 + GFF2885 0.82 +0.7
599,811 - GFF2885 0.85 +0.0
599,927 + +0.3
599,927 + -2.3
599,927 + +0.2
600,089 + +0.8
600,092 + -2.0
600,092 + -0.5
600,093 - +0.2
600,093 - -0.2
600,222 - GFF2886 0.23 -0.1
600,252 - GFF2886 0.26 -0.5
600,280 + GFF2886 0.30 +0.0
600,280 + GFF2886 0.30 -0.8
600,280 + GFF2886 0.30 +0.5
600,280 + GFF2886 0.30 +0.0
600,280 + GFF2886 0.30 -1.1
600,280 + GFF2886 0.30 -0.7
600,281 - GFF2886 0.30 +1.3
600,281 - GFF2886 0.30 +0.7
600,553 + GFF2886 0.63 +1.3
600,554 - GFF2886 0.63 +0.8
600,554 - GFF2886 0.63 -1.1
600,637 + GFF2886 0.73 +0.3
600,637 + GFF2886 0.73 +0.6
600,637 + GFF2886 0.73 +0.7
600,638 - GFF2886 0.73 -0.5
600,638 - GFF2886 0.73 -0.6
600,638 - GFF2886 0.73 +0.0
600,638 - GFF2886 0.73 -1.1
600,638 - GFF2886 0.73 -0.1
600,853 + +0.2
600,854 - -0.2
600,861 - -0.0

Or see this region's nucleotide sequence