Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2875 and GFF2876 are separated by 240 nucleotides GFF2876 and GFF2877 are separated by 53 nucleotides GFF2877 and GFF2878 are separated by 218 nucleotides GFF2878 and GFF2879 are separated by 93 nucleotides
GFF2875 - Muconate cycloisomerase 1, at 592,348 to 593,514
GFF2875
GFF2876 - hypothetical protein, at 593,755 to 594,189
GFF2876
GFF2877 - Oxalate:formate antiporter, at 594,243 to 595,544
GFF2877
GFF2878 - hypothetical protein, at 595,763 to 596,092
GFF2878
GFF2879 - hypothetical protein, at 596,186 to 596,860
GFF2879
Position (kb) 594
595
596 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.251 kb on + strand, within GFF2875 at 593.251 kb on + strand, within GFF2875 at 593.252 kb on - strand, within GFF2875 at 593.252 kb on - strand, within GFF2875 at 593.400 kb on - strand at 593.507 kb on + strand at 593.507 kb on + strand at 593.508 kb on - strand at 593.508 kb on - strand at 593.545 kb on - strand at 593.582 kb on - strand at 593.643 kb on - strand at 593.678 kb on + strand at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.103 kb on + strand, within GFF2876 at 594.104 kb on - strand, within GFF2876 at 594.104 kb on - strand, within GFF2876 at 594.240 kb on + strand at 594.240 kb on + strand at 594.301 kb on - strand at 594.322 kb on - strand at 594.359 kb on + strand at 594.382 kb on - strand, within GFF2877 at 594.420 kb on + strand, within GFF2877 at 594.420 kb on + strand, within GFF2877 at 594.464 kb on + strand, within GFF2877 at 594.465 kb on - strand, within GFF2877 at 594.607 kb on - strand, within GFF2877 at 594.607 kb on - strand, within GFF2877 at 594.607 kb on - strand, within GFF2877 at 594.607 kb on - strand, within GFF2877 at 594.761 kb on - strand, within GFF2877 at 594.894 kb on - strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.966 kb on + strand, within GFF2877 at 594.967 kb on - strand, within GFF2877 at 594.967 kb on - strand, within GFF2877 at 594.967 kb on - strand, within GFF2877 at 594.967 kb on - strand, within GFF2877 at 594.967 kb on - strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.737 kb on + strand at 595.758 kb on + strand at 595.758 kb on + strand at 595.758 kb on + strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.967 kb on + strand, within GFF2878 at 596.442 kb on + strand, within GFF2879 at 596.487 kb on + strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.536 kb on - strand, within GFF2879
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 593,251 + GFF2875 0.77 +0.0 593,251 + GFF2875 0.77 +0.6 593,252 - GFF2875 0.77 +0.7 593,252 - GFF2875 0.77 -1.1 593,400 - -0.4 593,507 + -0.4 593,507 + +0.0 593,508 - -0.6 593,508 - -0.1 593,545 - -0.3 593,582 - +1.1 593,643 - +0.5 593,678 + +0.5 594,103 + GFF2876 0.80 +0.0 594,103 + GFF2876 0.80 -1.3 594,103 + GFF2876 0.80 -1.5 594,103 + GFF2876 0.80 +0.5 594,103 + GFF2876 0.80 +0.6 594,104 - GFF2876 0.80 -0.0 594,104 - GFF2876 0.80 -0.3 594,240 + -0.8 594,240 + +0.5 594,301 - -0.4 594,322 - -2.0 594,359 + -0.1 594,382 - GFF2877 0.11 -0.4 594,420 + GFF2877 0.14 -1.0 594,420 + GFF2877 0.14 +0.1 594,464 + GFF2877 0.17 -0.5 594,465 - GFF2877 0.17 +0.7 594,607 - GFF2877 0.28 -0.0 594,607 - GFF2877 0.28 -0.7 594,607 - GFF2877 0.28 +0.3 594,607 - GFF2877 0.28 -0.7 594,761 - GFF2877 0.40 +0.1 594,894 - GFF2877 0.50 +0.2 594,966 + GFF2877 0.56 +1.9 594,966 + GFF2877 0.56 +0.5 594,966 + GFF2877 0.56 +0.0 594,966 + GFF2877 0.56 +1.2 594,966 + GFF2877 0.56 -0.0 594,966 + GFF2877 0.56 +1.3 594,966 + GFF2877 0.56 -1.8 594,966 + GFF2877 0.56 -0.0 594,966 + GFF2877 0.56 -1.0 594,966 + GFF2877 0.56 -0.7 594,966 + GFF2877 0.56 -0.6 594,967 - GFF2877 0.56 -0.5 594,967 - GFF2877 0.56 -0.2 594,967 - GFF2877 0.56 -0.2 594,967 - GFF2877 0.56 +0.8 594,967 - GFF2877 0.56 -0.3 595,359 + GFF2877 0.86 -1.4 595,359 + GFF2877 0.86 -0.9 595,359 + GFF2877 0.86 +0.2 595,359 + GFF2877 0.86 +0.7 595,359 + GFF2877 0.86 -0.2 595,359 + GFF2877 0.86 +0.5 595,360 - GFF2877 0.86 +1.0 595,360 - GFF2877 0.86 +1.0 595,360 - GFF2877 0.86 +0.6 595,737 + +0.7 595,758 + -0.4 595,758 + -1.1 595,758 + +0.6 595,759 - -0.3 595,759 - +0.7 595,759 - +0.0 595,759 - -0.1 595,967 + GFF2878 0.62 +0.3 596,442 + GFF2879 0.38 +1.8 596,487 + GFF2879 0.45 -0.0 596,488 - GFF2879 0.45 +0.0 596,488 - GFF2879 0.45 -0.2 596,536 - GFF2879 0.52 +2.6
Or see this region's nucleotide sequence