Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2839 and GFF2840 are separated by 94 nucleotides GFF2840 and GFF2841 are separated by 30 nucleotides GFF2841 and GFF2842 are separated by 11 nucleotides GFF2842 and GFF2843 are separated by 3 nucleotides
GFF2839 - hypothetical protein, at 549,160 to 550,542
GFF2839
GFF2840 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 550,637 to 551,440
GFF2840
GFF2841 - Vitamin B12 import ATP-binding protein BtuD, at 551,471 to 553,717
GFF2841
GFF2842 - High-affinity branched-chain amino acid transport system permease protein LivH, at 553,729 to 554,619
GFF2842
GFF2843 - hypothetical protein, at 554,623 to 555,687
GFF2843
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1 at 550.685 kb on + strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 551.021 kb on + strand, within GFF2840 at 551.270 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.285 kb on + strand, within GFF2840 at 551.364 kb on - strand at 551.735 kb on + strand, within GFF2841 at 551.963 kb on + strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 552.498 kb on - strand, within GFF2841 at 552.520 kb on + strand, within GFF2841 at 553.094 kb on + strand, within GFF2841 at 553.094 kb on + strand, within GFF2841 at 553.094 kb on + strand, within GFF2841 at 553.094 kb on + strand, within GFF2841 at 553.226 kb on + strand, within GFF2841 at 553.397 kb on + strand, within GFF2841 at 553.617 kb on - strand at 553.682 kb on + strand at 553.790 kb on - strand at 553.790 kb on - strand at 553.790 kb on - strand at 554.012 kb on - strand, within GFF2842 at 554.216 kb on - strand, within GFF2842 at 554.216 kb on - strand, within GFF2842 at 554.469 kb on - strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.501 kb on - strand, within GFF2842 at 554.501 kb on - strand, within GFF2842 at 554.545 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.660 kb on - strand at 554.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 550,685 + -0.6 550,686 - -0.5 550,686 - +0.7 550,686 - +1.0 550,686 - -0.6 550,686 - -0.5 550,686 - +0.7 551,021 + GFF2840 0.48 +0.0 551,270 + GFF2840 0.79 +0.5 551,279 + GFF2840 0.80 -0.8 551,279 + GFF2840 0.80 +1.1 551,279 + GFF2840 0.80 -0.3 551,280 - GFF2840 0.80 -0.9 551,280 - GFF2840 0.80 -1.4 551,280 - GFF2840 0.80 -0.9 551,280 - GFF2840 0.80 -1.5 551,280 - GFF2840 0.80 -1.5 551,280 - GFF2840 0.80 +0.6 551,285 + GFF2840 0.81 -1.4 551,364 - -1.4 551,735 + GFF2841 0.12 -0.0 551,963 + GFF2841 0.22 +0.1 551,964 - GFF2841 0.22 -0.5 551,964 - GFF2841 0.22 +0.8 551,964 - GFF2841 0.22 +0.2 551,964 - GFF2841 0.22 -0.6 552,498 - GFF2841 0.46 -1.2 552,520 + GFF2841 0.47 +0.1 553,094 + GFF2841 0.72 -0.2 553,094 + GFF2841 0.72 +0.3 553,094 + GFF2841 0.72 -2.0 553,094 + GFF2841 0.72 -0.7 553,226 + GFF2841 0.78 -1.1 553,397 + GFF2841 0.86 +0.1 553,617 - -0.7 553,682 + -1.1 553,790 - -0.6 553,790 - +0.4 553,790 - -0.2 554,012 - GFF2842 0.32 +0.4 554,216 - GFF2842 0.55 -0.2 554,216 - GFF2842 0.55 -0.1 554,469 - GFF2842 0.83 +0.8 554,500 + GFF2842 0.87 +0.2 554,500 + GFF2842 0.87 +0.2 554,500 + GFF2842 0.87 +0.3 554,500 + GFF2842 0.87 -0.2 554,500 + GFF2842 0.87 +1.4 554,500 + GFF2842 0.87 -0.4 554,501 - GFF2842 0.87 -0.9 554,501 - GFF2842 0.87 +1.2 554,545 + +0.8 554,659 + +0.4 554,659 + -0.6 554,659 + -0.7 554,659 + -1.2 554,659 + +1.0 554,660 - -0.7 554,660 - -0.1
Or see this region's nucleotide sequence