Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2826 and GFF2827 are separated by 37 nucleotides GFF2827 and GFF2828 are separated by 16 nucleotides GFF2828 and GFF2829 are separated by 23 nucleotides
GFF2826 - hypothetical protein, at 535,492 to 536,727
GFF2826
GFF2827 - hypothetical protein, at 536,765 to 537,781
GFF2827
GFF2828 - 3-keto-5-aminohexanoate cleavage enzyme, at 537,798 to 538,724
GFF2828
GFF2829 - Kynurenine formamidase, at 538,748 to 539,521
GFF2829
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.782 kb on - strand, within GFF2826 at 535.799 kb on + strand, within GFF2826 at 535.799 kb on + strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.889 kb on + strand, within GFF2826 at 536.204 kb on + strand, within GFF2826 at 536.204 kb on + strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.222 kb on + strand, within GFF2826 at 536.223 kb on - strand, within GFF2826 at 536.223 kb on - strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.418 kb on + strand, within GFF2826 at 536.418 kb on + strand, within GFF2826 at 536.428 kb on + strand, within GFF2826 at 536.429 kb on - strand, within GFF2826 at 536.429 kb on - strand, within GFF2826 at 536.841 kb on + strand at 536.841 kb on + strand at 536.842 kb on - strand at 536.842 kb on - strand at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.726 kb on + strand at 537.727 kb on - strand at 538.048 kb on + strand, within GFF2828 at 538.048 kb on + strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.196 kb on - strand, within GFF2828 at 538.213 kb on + strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.262 kb on - strand, within GFF2828 at 538.322 kb on - strand, within GFF2828 at 538.322 kb on - strand, within GFF2828
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 535,782 - GFF2826 0.23 +0.3 535,799 + GFF2826 0.25 +0.1 535,799 + GFF2826 0.25 +0.7 535,800 - GFF2826 0.25 -0.4 535,800 - GFF2826 0.25 -0.3 535,800 - GFF2826 0.25 -0.4 535,800 - GFF2826 0.25 -0.8 535,889 + GFF2826 0.32 +0.3 536,204 + GFF2826 0.58 -0.2 536,204 + GFF2826 0.58 -0.6 536,205 - GFF2826 0.58 -0.9 536,205 - GFF2826 0.58 -0.5 536,205 - GFF2826 0.58 -0.1 536,222 + GFF2826 0.59 -0.3 536,223 - GFF2826 0.59 +0.1 536,223 - GFF2826 0.59 -0.5 536,276 + GFF2826 0.63 -1.6 536,276 + GFF2826 0.63 -0.1 536,276 + GFF2826 0.63 -0.1 536,276 + GFF2826 0.63 +1.2 536,277 - GFF2826 0.64 +0.4 536,277 - GFF2826 0.64 -0.4 536,277 - GFF2826 0.64 -0.2 536,277 - GFF2826 0.64 +0.0 536,277 - GFF2826 0.64 +0.4 536,418 + GFF2826 0.75 +0.8 536,418 + GFF2826 0.75 -0.4 536,428 + GFF2826 0.76 +1.2 536,429 - GFF2826 0.76 +0.2 536,429 - GFF2826 0.76 -1.9 536,841 + -1.1 536,841 + -0.0 536,842 - +0.0 536,842 - -1.3 537,201 + GFF2827 0.43 +0.9 537,201 + GFF2827 0.43 -0.1 537,201 + GFF2827 0.43 +0.8 537,201 + GFF2827 0.43 +1.6 537,202 - GFF2827 0.43 +0.9 537,202 - GFF2827 0.43 -0.2 537,202 - GFF2827 0.43 +0.2 537,202 - GFF2827 0.43 +0.9 537,202 - GFF2827 0.43 -0.2 537,202 - GFF2827 0.43 -0.2 537,202 - GFF2827 0.43 -0.1 537,202 - GFF2827 0.43 -1.3 537,726 + +0.6 537,727 - -1.4 538,048 + GFF2828 0.27 +1.8 538,048 + GFF2828 0.27 +0.1 538,049 - GFF2828 0.27 -1.0 538,049 - GFF2828 0.27 +0.3 538,049 - GFF2828 0.27 +0.1 538,196 - GFF2828 0.43 -1.4 538,213 + GFF2828 0.45 -1.0 538,214 - GFF2828 0.45 +0.9 538,214 - GFF2828 0.45 +2.0 538,214 - GFF2828 0.45 -0.1 538,214 - GFF2828 0.45 -0.8 538,262 - GFF2828 0.50 +0.3 538,322 - GFF2828 0.57 +0.0 538,322 - GFF2828 0.57 -0.0
Or see this region's nucleotide sequence