Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2823 and GFF2824 are separated by 13 nucleotides GFF2824 and GFF2825 are separated by 84 nucleotides GFF2825 and GFF2826 are separated by 51 nucleotides
GFF2823 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 532,446 to 533,354
GFF2823
GFF2824 - D-beta-hydroxybutyrate dehydrogenase, at 533,368 to 534,147
GFF2824
GFF2825 - hypothetical protein, at 534,232 to 535,440
GFF2825
GFF2826 - hypothetical protein, at 535,492 to 536,727
GFF2826
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.540 kb on - strand, within GFF2824 at 533.541 kb on + strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 533.828 kb on - strand, within GFF2824 at 534.133 kb on + strand at 534.133 kb on + strand at 534.213 kb on + strand at 534.214 kb on - strand at 534.214 kb on - strand at 534.227 kb on + strand at 534.228 kb on - strand at 534.652 kb on + strand, within GFF2825 at 534.653 kb on - strand, within GFF2825 at 534.755 kb on - strand, within GFF2825 at 534.869 kb on + strand, within GFF2825 at 534.870 kb on - strand, within GFF2825 at 535.069 kb on + strand, within GFF2825 at 535.069 kb on + strand, within GFF2825 at 535.159 kb on + strand, within GFF2825 at 535.159 kb on + strand, within GFF2825 at 535.312 kb on + strand, within GFF2825 at 535.312 kb on + strand, within GFF2825 at 535.313 kb on - strand, within GFF2825 at 535.313 kb on - strand, within GFF2825 at 535.313 kb on - strand, within GFF2825 at 535.313 kb on - strand, within GFF2825 at 535.313 kb on - strand, within GFF2825 at 535.360 kb on + strand at 535.361 kb on - strand at 535.399 kb on + strand at 535.399 kb on + strand at 535.399 kb on + strand at 535.399 kb on + strand at 535.399 kb on + strand at 535.399 kb on + strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.400 kb on - strand at 535.401 kb on + strand at 535.402 kb on - strand at 535.438 kb on + strand at 535.438 kb on + strand at 535.439 kb on - strand at 535.595 kb on + strand at 535.647 kb on - strand, within GFF2826 at 535.782 kb on - strand, within GFF2826 at 535.799 kb on + strand, within GFF2826 at 535.799 kb on + strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.800 kb on - strand, within GFF2826 at 535.889 kb on + strand, within GFF2826 at 536.204 kb on + strand, within GFF2826 at 536.204 kb on + strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.205 kb on - strand, within GFF2826 at 536.222 kb on + strand, within GFF2826 at 536.223 kb on - strand, within GFF2826 at 536.223 kb on - strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.276 kb on + strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.277 kb on - strand, within GFF2826 at 536.418 kb on + strand, within GFF2826 at 536.418 kb on + strand, within GFF2826 at 536.428 kb on + strand, within GFF2826 at 536.429 kb on - strand, within GFF2826 at 536.429 kb on - strand, within GFF2826
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 533,540 - GFF2824 0.22 -1.1 533,540 - GFF2824 0.22 +0.2 533,540 - GFF2824 0.22 -0.4 533,540 - GFF2824 0.22 -0.2 533,540 - GFF2824 0.22 -0.7 533,541 + GFF2824 0.22 -0.5 533,828 - GFF2824 0.59 +0.6 533,828 - GFF2824 0.59 +0.5 533,828 - GFF2824 0.59 -0.1 534,133 + -0.8 534,133 + +0.0 534,213 + -0.1 534,214 - +0.0 534,214 - -0.2 534,227 + -1.2 534,228 - -0.2 534,652 + GFF2825 0.35 -0.8 534,653 - GFF2825 0.35 -0.3 534,755 - GFF2825 0.43 -0.0 534,869 + GFF2825 0.53 -1.9 534,870 - GFF2825 0.53 -2.1 535,069 + GFF2825 0.69 +0.5 535,069 + GFF2825 0.69 +0.3 535,159 + GFF2825 0.77 -0.5 535,159 + GFF2825 0.77 -0.5 535,312 + GFF2825 0.89 -0.7 535,312 + GFF2825 0.89 -0.5 535,313 - GFF2825 0.89 -0.7 535,313 - GFF2825 0.89 +0.4 535,313 - GFF2825 0.89 -0.2 535,313 - GFF2825 0.89 +0.3 535,313 - GFF2825 0.89 -1.2 535,360 + +1.1 535,361 - +0.7 535,399 + -0.0 535,399 + -0.6 535,399 + +0.1 535,399 + +0.2 535,399 + -0.2 535,399 + +0.1 535,400 - -0.8 535,400 - -0.7 535,400 - +1.4 535,400 - -0.6 535,400 - +0.3 535,400 - +0.1 535,400 - -1.2 535,400 - -1.0 535,400 - +1.0 535,400 - +0.0 535,401 + +0.7 535,402 - +1.1 535,438 + +0.4 535,438 + +0.0 535,439 - +0.0 535,595 + +0.3 535,647 - GFF2826 0.13 -0.9 535,782 - GFF2826 0.23 +0.3 535,799 + GFF2826 0.25 +0.1 535,799 + GFF2826 0.25 +0.7 535,800 - GFF2826 0.25 -0.4 535,800 - GFF2826 0.25 -0.3 535,800 - GFF2826 0.25 -0.4 535,800 - GFF2826 0.25 -0.8 535,889 + GFF2826 0.32 +0.3 536,204 + GFF2826 0.58 -0.2 536,204 + GFF2826 0.58 -0.6 536,205 - GFF2826 0.58 -0.9 536,205 - GFF2826 0.58 -0.5 536,205 - GFF2826 0.58 -0.1 536,222 + GFF2826 0.59 -0.3 536,223 - GFF2826 0.59 +0.1 536,223 - GFF2826 0.59 -0.5 536,276 + GFF2826 0.63 -1.6 536,276 + GFF2826 0.63 -0.1 536,276 + GFF2826 0.63 -0.1 536,276 + GFF2826 0.63 +1.2 536,277 - GFF2826 0.64 +0.4 536,277 - GFF2826 0.64 -0.4 536,277 - GFF2826 0.64 -0.2 536,277 - GFF2826 0.64 +0.0 536,277 - GFF2826 0.64 +0.4 536,418 + GFF2826 0.75 +0.8 536,418 + GFF2826 0.75 -0.4 536,428 + GFF2826 0.76 +1.2 536,429 - GFF2826 0.76 +0.2 536,429 - GFF2826 0.76 -1.9
Or see this region's nucleotide sequence