Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2781 and GFF2782 overlap by 8 nucleotides GFF2782 and GFF2783 are separated by 396 nucleotides GFF2783 and GFF2784 are separated by 120 nucleotides GFF2784 and GFF2785 are separated by 11 nucleotides
GFF2781 - Arsenate reductase, at 484,833 to 485,372
GFF2781
GFF2782 - hypothetical protein, at 485,365 to 485,727
GFF2782
GFF2783 - hypothetical protein, at 486,124 to 487,110
GFF2783
GFF2784 - Putative aliphatic sulfonates transport permease protein SsuC, at 487,231 to 487,962
GFF2784
GFF2785 - Nitrate import ATP-binding protein NrtD, at 487,974 to 488,807
GFF2785
Position (kb) 486
487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.173 kb on + strand, within GFF2781 at 485.173 kb on + strand, within GFF2781 at 485.173 kb on + strand, within GFF2781 at 485.173 kb on + strand, within GFF2781 at 485.174 kb on - strand, within GFF2781 at 485.174 kb on - strand, within GFF2781 at 485.495 kb on + strand, within GFF2782 at 485.495 kb on + strand, within GFF2782 at 485.495 kb on + strand, within GFF2782 at 485.507 kb on + strand, within GFF2782 at 485.507 kb on + strand, within GFF2782 at 485.507 kb on + strand, within GFF2782 at 485.508 kb on - strand, within GFF2782 at 485.508 kb on - strand, within GFF2782 at 485.508 kb on - strand, within GFF2782 at 485.762 kb on + strand at 485.762 kb on + strand at 485.826 kb on + strand at 485.826 kb on + strand at 485.827 kb on - strand at 485.827 kb on - strand at 485.891 kb on + strand at 485.891 kb on + strand at 485.891 kb on + strand at 485.891 kb on + strand at 485.892 kb on - strand at 486.164 kb on + strand at 486.318 kb on - strand, within GFF2783 at 486.442 kb on + strand, within GFF2783 at 486.443 kb on - strand, within GFF2783 at 486.520 kb on + strand, within GFF2783 at 486.547 kb on + strand, within GFF2783 at 486.547 kb on + strand, within GFF2783 at 486.548 kb on - strand, within GFF2783 at 486.548 kb on - strand, within GFF2783 at 486.658 kb on + strand, within GFF2783 at 486.658 kb on + strand, within GFF2783 at 486.659 kb on - strand, within GFF2783 at 486.776 kb on - strand, within GFF2783 at 486.928 kb on + strand, within GFF2783 at 486.928 kb on + strand, within GFF2783 at 486.928 kb on + strand, within GFF2783 at 486.929 kb on - strand, within GFF2783 at 486.929 kb on - strand, within GFF2783 at 486.929 kb on - strand, within GFF2783 at 486.929 kb on - strand, within GFF2783 at 486.929 kb on - strand, within GFF2783 at 486.934 kb on + strand, within GFF2783 at 486.934 kb on + strand, within GFF2783 at 486.934 kb on + strand, within GFF2783 at 486.934 kb on + strand, within GFF2783 at 487.096 kb on + strand at 487.097 kb on - strand at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.664 kb on + strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.665 kb on - strand, within GFF2784 at 487.775 kb on - strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.780 kb on + strand, within GFF2784 at 487.781 kb on - strand, within GFF2784 at 487.781 kb on - strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 485,173 + GFF2781 0.63 +0.5 485,173 + GFF2781 0.63 -0.4 485,173 + GFF2781 0.63 -0.1 485,173 + GFF2781 0.63 -0.5 485,174 - GFF2781 0.63 +0.1 485,174 - GFF2781 0.63 +0.4 485,495 + GFF2782 0.36 +0.9 485,495 + GFF2782 0.36 +0.0 485,495 + GFF2782 0.36 -1.0 485,507 + GFF2782 0.39 +0.1 485,507 + GFF2782 0.39 +0.6 485,507 + GFF2782 0.39 +0.6 485,508 - GFF2782 0.39 -0.6 485,508 - GFF2782 0.39 -1.1 485,508 - GFF2782 0.39 -1.0 485,762 + +0.6 485,762 + +0.9 485,826 + -0.1 485,826 + +0.7 485,827 - -0.8 485,827 - -0.7 485,891 + -0.1 485,891 + -0.2 485,891 + -0.6 485,891 + +0.2 485,892 - +0.0 486,164 + +0.3 486,318 - GFF2783 0.20 -0.7 486,442 + GFF2783 0.32 -0.3 486,443 - GFF2783 0.32 -1.3 486,520 + GFF2783 0.40 -0.1 486,547 + GFF2783 0.43 -0.7 486,547 + GFF2783 0.43 +1.2 486,548 - GFF2783 0.43 +0.3 486,548 - GFF2783 0.43 -1.8 486,658 + GFF2783 0.54 -0.5 486,658 + GFF2783 0.54 +0.6 486,659 - GFF2783 0.54 -0.8 486,776 - GFF2783 0.66 +0.7 486,928 + GFF2783 0.81 -0.4 486,928 + GFF2783 0.81 -0.4 486,928 + GFF2783 0.81 +0.2 486,929 - GFF2783 0.82 +0.0 486,929 - GFF2783 0.82 +0.4 486,929 - GFF2783 0.82 -0.2 486,929 - GFF2783 0.82 -0.2 486,929 - GFF2783 0.82 -0.3 486,934 + GFF2783 0.82 -0.4 486,934 + GFF2783 0.82 +1.3 486,934 + GFF2783 0.82 +0.1 486,934 + GFF2783 0.82 +0.8 487,096 + +0.0 487,097 - +0.3 487,664 + GFF2784 0.59 +0.4 487,664 + GFF2784 0.59 -0.3 487,664 + GFF2784 0.59 +1.1 487,664 + GFF2784 0.59 -0.9 487,665 - GFF2784 0.59 -0.7 487,665 - GFF2784 0.59 +2.0 487,665 - GFF2784 0.59 +0.5 487,665 - GFF2784 0.59 -0.9 487,775 - GFF2784 0.74 -1.2 487,780 + GFF2784 0.75 -0.5 487,780 + GFF2784 0.75 -0.7 487,780 + GFF2784 0.75 +0.2 487,781 - GFF2784 0.75 -0.3 487,781 - GFF2784 0.75 +1.3 487,828 + GFF2784 0.82 +0.7 487,828 + GFF2784 0.82 -0.6 487,828 + GFF2784 0.82 +1.3 487,829 - GFF2784 0.82 -0.6 487,829 - GFF2784 0.82 +0.4 487,949 + +1.5 487,949 + +0.1 487,949 + +0.2 487,949 + -1.1 487,949 + +0.3 487,949 + +0.5 487,950 - +0.7 487,950 - -0.7 487,950 - -0.1 487,971 + +0.9
Or see this region's nucleotide sequence