Strain Fitness in Xanthobacter sp. DMC5 around GFF2778

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2777 and GFF2778 are separated by 79 nucleotidesGFF2778 and GFF2779 are separated by 253 nucleotides GFF2777 - Proline/betaine transporter, at 480,745 to 482,070 GFF2777 GFF2778 - Nodulation protein D 2, at 482,150 to 483,079 GFF2778 GFF2779 - Arsenical-resistance protein Acr3, at 483,333 to 484,385 GFF2779 Position (kb) 482 483 484Strain fitness (log2 ratio) -2 -1 0 1 2at 481.178 kb on + strand, within GFF2777at 481.178 kb on + strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.259 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.274 kb on + strand, within GFF2777at 481.275 kb on - strand, within GFF2777at 481.391 kb on + strand, within GFF2777at 481.391 kb on + strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.702 kb on - strand, within GFF2777at 481.716 kb on - strand, within GFF2777at 481.716 kb on - strand, within GFF2777at 481.934 kb on + strand, within GFF2777at 481.935 kb on - strand, within GFF2777at 481.935 kb on - strand, within GFF2777at 481.935 kb on - strand, within GFF2777at 481.940 kb on + strandat 481.940 kb on + strandat 481.940 kb on + strandat 481.941 kb on - strandat 481.941 kb on - strandat 481.941 kb on - strandat 482.155 kb on + strandat 482.164 kb on + strandat 482.165 kb on - strandat 482.165 kb on - strandat 482.303 kb on + strand, within GFF2778at 482.303 kb on + strand, within GFF2778at 482.489 kb on + strand, within GFF2778at 482.489 kb on + strand, within GFF2778at 482.490 kb on - strand, within GFF2778at 482.669 kb on + strand, within GFF2778at 482.670 kb on - strand, within GFF2778at 482.670 kb on - strand, within GFF2778at 482.681 kb on + strand, within GFF2778at 482.681 kb on + strand, within GFF2778at 482.682 kb on - strand, within GFF2778at 482.682 kb on - strand, within GFF2778at 482.729 kb on + strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.730 kb on - strand, within GFF2778at 482.755 kb on - strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.906 kb on + strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.907 kb on - strand, within GFF2778at 482.912 kb on + strand, within GFF2778at 482.912 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.954 kb on + strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 482.955 kb on - strand, within GFF2778at 483.066 kb on + strandat 483.066 kb on + strandat 483.066 kb on + strandat 483.066 kb on + strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.067 kb on - strandat 483.120 kb on + strandat 483.121 kb on - strandat 483.121 kb on - strandat 483.271 kb on + strandat 483.272 kb on - strandat 483.285 kb on + strandat 483.286 kb on - strandat 483.286 kb on - strandat 483.314 kb on + strandat 483.314 kb on + strandat 483.334 kb on + strandat 483.376 kb on + strandat 483.590 kb on - strand, within GFF2779at 483.610 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.829 kb on + strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 483.830 kb on - strand, within GFF2779at 484.045 kb on + strand, within GFF2779

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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481,178 + GFF2777 0.33 +0.9
481,178 + GFF2777 0.33 +0.3
481,179 - GFF2777 0.33 +0.9
481,179 - GFF2777 0.33 -0.6
481,179 - GFF2777 0.33 -0.2
481,179 - GFF2777 0.33 -0.2
481,259 + GFF2777 0.39 +0.2
481,271 + GFF2777 0.40 -0.1
481,271 + GFF2777 0.40 -0.4
481,271 + GFF2777 0.40 -0.8
481,274 + GFF2777 0.40 +0.4
481,275 - GFF2777 0.40 +0.2
481,391 + GFF2777 0.49 -0.8
481,391 + GFF2777 0.49 -0.6
481,392 - GFF2777 0.49 -0.5
481,392 - GFF2777 0.49 +0.9
481,392 - GFF2777 0.49 -1.1
481,392 - GFF2777 0.49 -0.1
481,392 - GFF2777 0.49 +0.2
481,424 + GFF2777 0.51 +1.1
481,424 + GFF2777 0.51 -0.4
481,424 + GFF2777 0.51 -0.5
481,424 + GFF2777 0.51 +0.4
481,424 + GFF2777 0.51 -0.3
481,424 + GFF2777 0.51 -0.4
481,424 + GFF2777 0.51 -0.1
481,424 + GFF2777 0.51 -0.4
481,424 + GFF2777 0.51 +0.7
481,425 - GFF2777 0.51 -1.6
481,425 - GFF2777 0.51 -0.3
481,425 - GFF2777 0.51 -0.6
481,425 - GFF2777 0.51 -0.2
481,425 - GFF2777 0.51 -0.4
481,425 - GFF2777 0.51 +0.0
481,619 + GFF2777 0.66 +0.8
481,619 + GFF2777 0.66 -0.8
481,619 + GFF2777 0.66 +1.5
481,619 + GFF2777 0.66 -0.3
481,619 + GFF2777 0.66 +0.7
481,619 + GFF2777 0.66 -1.2
481,619 + GFF2777 0.66 +0.2
481,620 - GFF2777 0.66 +0.4
481,620 - GFF2777 0.66 -0.6
481,620 - GFF2777 0.66 -0.7
481,620 - GFF2777 0.66 +0.2
481,620 - GFF2777 0.66 -0.1
481,620 - GFF2777 0.66 +0.6
481,702 - GFF2777 0.72 -2.2
481,716 - GFF2777 0.73 +0.5
481,716 - GFF2777 0.73 +0.2
481,934 + GFF2777 0.90 +0.8
481,935 - GFF2777 0.90 -1.1
481,935 - GFF2777 0.90 -1.4
481,935 - GFF2777 0.90 -0.2
481,940 + +0.4
481,940 + +0.4
481,940 + +0.1
481,941 - +0.6
481,941 - -0.6
481,941 - +0.2
482,155 + -0.4
482,164 + +0.0
482,165 - +0.0
482,165 - +0.9
482,303 + GFF2778 0.16 +1.0
482,303 + GFF2778 0.16 -0.7
482,489 + GFF2778 0.36 -0.4
482,489 + GFF2778 0.36 -0.3
482,490 - GFF2778 0.37 +0.8
482,669 + GFF2778 0.56 +1.3
482,670 - GFF2778 0.56 -1.0
482,670 - GFF2778 0.56 -0.5
482,681 + GFF2778 0.57 +0.1
482,681 + GFF2778 0.57 -0.2
482,682 - GFF2778 0.57 -0.3
482,682 - GFF2778 0.57 +0.6
482,729 + GFF2778 0.62 -0.4
482,730 - GFF2778 0.62 -1.1
482,730 - GFF2778 0.62 +0.2
482,730 - GFF2778 0.62 +0.0
482,755 - GFF2778 0.65 -0.4
482,906 + GFF2778 0.81 -0.2
482,906 + GFF2778 0.81 +1.3
482,906 + GFF2778 0.81 -1.0
482,907 - GFF2778 0.81 -0.9
482,907 - GFF2778 0.81 -0.4
482,907 - GFF2778 0.81 +0.8
482,912 + GFF2778 0.82 +0.1
482,912 + GFF2778 0.82 -0.2
482,954 + GFF2778 0.86 -1.0
482,954 + GFF2778 0.86 -0.6
482,954 + GFF2778 0.86 +1.4
482,954 + GFF2778 0.86 -0.3
482,954 + GFF2778 0.86 +0.1
482,955 - GFF2778 0.87 -1.2
482,955 - GFF2778 0.87 +1.4
482,955 - GFF2778 0.87 +0.3
482,955 - GFF2778 0.87 -0.2
482,955 - GFF2778 0.87 -1.5
482,955 - GFF2778 0.87 +0.5
483,066 + +0.4
483,066 + -2.2
483,066 + +0.2
483,066 + -1.1
483,067 - -0.0
483,067 - -1.5
483,067 - +1.1
483,067 - -0.6
483,120 + -0.1
483,121 - -1.1
483,121 - -1.2
483,271 + +0.4
483,272 - +1.9
483,285 + +0.4
483,286 - +0.3
483,286 - -0.7
483,314 + -0.3
483,314 + -0.8
483,334 + -1.6
483,376 + +0.7
483,590 - GFF2779 0.24 +0.0
483,610 + GFF2779 0.26 +1.6
483,829 + GFF2779 0.47 -0.0
483,829 + GFF2779 0.47 -0.1
483,829 + GFF2779 0.47 +0.6
483,829 + GFF2779 0.47 +0.2
483,830 - GFF2779 0.47 -0.3
483,830 - GFF2779 0.47 -0.0
483,830 - GFF2779 0.47 +0.9
484,045 + GFF2779 0.68 -1.0

Or see this region's nucleotide sequence