Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2766 and GFF2767 are separated by 52 nucleotides GFF2767 and GFF2768 are separated by 40 nucleotides
GFF2766 - 3-methylitaconate isomerase, at 467,418 to 468,533
GFF2766
GFF2767 - Glyoxylate/hydroxypyruvate reductase B, at 468,586 to 469,641
GFF2767
GFF2768 - (Z)-2-((N-methylformamido)methylene)-5-hydroxybut yrolactone dehydrogenase, at 469,682 to 471,157
GFF2768
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 467.622 kb on + strand, within GFF2766 at 467.622 kb on + strand, within GFF2766 at 467.622 kb on + strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.664 kb on + strand, within GFF2766 at 467.665 kb on - strand, within GFF2766 at 467.762 kb on + strand, within GFF2766 at 467.763 kb on - strand, within GFF2766 at 467.763 kb on - strand, within GFF2766 at 468.148 kb on + strand, within GFF2766 at 468.229 kb on - strand, within GFF2766 at 468.453 kb on + strand at 468.507 kb on + strand at 468.508 kb on - strand at 468.508 kb on - strand at 468.508 kb on - strand at 468.597 kb on + strand at 468.598 kb on - strand at 468.598 kb on - strand at 468.598 kb on - strand at 468.644 kb on + strand at 468.645 kb on - strand at 468.665 kb on + strand at 468.666 kb on - strand at 468.666 kb on - strand at 468.666 kb on - strand at 469.090 kb on - strand, within GFF2767 at 469.501 kb on + strand, within GFF2767 at 469.502 kb on - strand, within GFF2767 at 469.502 kb on - strand, within GFF2767 at 469.502 kb on - strand, within GFF2767 at 469.691 kb on + strand at 469.691 kb on + strand at 469.691 kb on + strand at 469.691 kb on + strand at 469.692 kb on - strand at 469.692 kb on - strand at 469.692 kb on - strand at 469.760 kb on + strand at 470.010 kb on - strand, within GFF2768 at 470.010 kb on - strand, within GFF2768 at 470.074 kb on + strand, within GFF2768 at 470.074 kb on + strand, within GFF2768 at 470.075 kb on - strand, within GFF2768 at 470.084 kb on + strand, within GFF2768 at 470.084 kb on + strand, within GFF2768 at 470.085 kb on - strand, within GFF2768 at 470.085 kb on - strand, within GFF2768 at 470.564 kb on + strand, within GFF2768 at 470.564 kb on + strand, within GFF2768 at 470.565 kb on - strand, within GFF2768 at 470.577 kb on + strand, within GFF2768 at 470.577 kb on + strand, within GFF2768 at 470.577 kb on + strand, within GFF2768 at 470.578 kb on - strand, within GFF2768 at 470.578 kb on - strand, within GFF2768
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 467,622 + GFF2766 0.18 +0.1 467,622 + GFF2766 0.18 -1.0 467,622 + GFF2766 0.18 +0.9 467,623 - GFF2766 0.18 +0.0 467,623 - GFF2766 0.18 +0.2 467,623 - GFF2766 0.18 -0.4 467,623 - GFF2766 0.18 +1.0 467,664 + GFF2766 0.22 -0.4 467,665 - GFF2766 0.22 +0.1 467,762 + GFF2766 0.31 -0.4 467,763 - GFF2766 0.31 -0.3 467,763 - GFF2766 0.31 +0.1 468,148 + GFF2766 0.65 -0.4 468,229 - GFF2766 0.73 +0.1 468,453 + -0.7 468,507 + -0.2 468,508 - -0.2 468,508 - +0.9 468,508 - -0.0 468,597 + -0.3 468,598 - -0.7 468,598 - +0.2 468,598 - +0.2 468,644 + +0.1 468,645 - -0.5 468,665 + -0.2 468,666 - -0.2 468,666 - +0.0 468,666 - -0.6 469,090 - GFF2767 0.48 +0.6 469,501 + GFF2767 0.87 -0.7 469,502 - GFF2767 0.87 +0.1 469,502 - GFF2767 0.87 -2.2 469,502 - GFF2767 0.87 +0.4 469,691 + -0.1 469,691 + +0.1 469,691 + -1.4 469,691 + +0.4 469,692 - -1.0 469,692 - -0.4 469,692 - +0.9 469,760 + -1.0 470,010 - GFF2768 0.22 +0.6 470,010 - GFF2768 0.22 +0.9 470,074 + GFF2768 0.27 +0.4 470,074 + GFF2768 0.27 +0.7 470,075 - GFF2768 0.27 +0.3 470,084 + GFF2768 0.27 -1.0 470,084 + GFF2768 0.27 +0.7 470,085 - GFF2768 0.27 -0.7 470,085 - GFF2768 0.27 +0.6 470,564 + GFF2768 0.60 -0.7 470,564 + GFF2768 0.60 +0.7 470,565 - GFF2768 0.60 -0.3 470,577 + GFF2768 0.61 -0.1 470,577 + GFF2768 0.61 -0.1 470,577 + GFF2768 0.61 +0.7 470,578 - GFF2768 0.61 +0.5 470,578 - GFF2768 0.61 +0.1
Or see this region's nucleotide sequence