Strain Fitness in Xanthobacter sp. DMC5 around GFF2748

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2747 and GFF2748 are separated by 228 nucleotidesGFF2748 and GFF2749 are separated by 438 nucleotides GFF2747 - Para-nitrobenzyl esterase, at 446,425 to 447,954 GFF2747 GFF2748 - Metal-pseudopaline receptor CntO, at 448,183 to 450,378 GFF2748 GFF2749 - putative siderophore transport system ATP-binding protein YusV, at 450,817 to 451,656 GFF2749 Position (kb) 448 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 447.262 kb on + strand, within GFF2747at 447.263 kb on - strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.284 kb on - strand, within GFF2747at 447.520 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.634 kb on + strand, within GFF2747at 447.646 kb on + strand, within GFF2747at 447.647 kb on - strand, within GFF2747at 447.647 kb on - strand, within GFF2747at 447.668 kb on + strand, within GFF2747at 447.668 kb on + strand, within GFF2747at 447.711 kb on - strand, within GFF2747at 447.757 kb on + strand, within GFF2747at 447.758 kb on - strand, within GFF2747at 447.807 kb on - strandat 447.825 kb on + strandat 447.825 kb on + strandat 447.825 kb on + strandat 447.826 kb on - strandat 447.826 kb on - strandat 447.844 kb on + strandat 447.844 kb on + strandat 447.844 kb on + strandat 447.845 kb on - strandat 448.010 kb on - strandat 448.111 kb on + strandat 448.111 kb on + strandat 448.165 kb on + strandat 448.166 kb on - strandat 448.264 kb on + strandat 448.264 kb on + strandat 448.264 kb on + strandat 448.265 kb on - strandat 448.265 kb on - strandat 448.268 kb on + strandat 448.268 kb on + strandat 448.268 kb on + strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.272 kb on - strandat 448.352 kb on + strandat 448.353 kb on - strandat 448.353 kb on - strandat 448.353 kb on - strandat 448.379 kb on + strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.487 kb on + strand, within GFF2748at 448.544 kb on + strand, within GFF2748at 448.544 kb on + strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.577 kb on + strand, within GFF2748at 448.583 kb on + strand, within GFF2748at 448.584 kb on - strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.785 kb on - strand, within GFF2748at 448.833 kb on - strand, within GFF2748at 448.859 kb on + strand, within GFF2748at 448.860 kb on - strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.869 kb on - strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.896 kb on - strand, within GFF2748at 448.941 kb on + strand, within GFF2748at 448.941 kb on + strand, within GFF2748at 448.941 kb on + strand, within GFF2748at 448.982 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.991 kb on + strand, within GFF2748at 448.992 kb on - strand, within GFF2748at 448.992 kb on - strand, within GFF2748at 448.992 kb on - strand, within GFF2748at 448.992 kb on - strand, within GFF2748at 449.057 kb on + strand, within GFF2748at 449.057 kb on + strand, within GFF2748at 449.057 kb on + strand, within GFF2748at 449.058 kb on - strand, within GFF2748at 449.126 kb on + strand, within GFF2748at 449.126 kb on + strand, within GFF2748at 449.126 kb on + strand, within GFF2748at 449.127 kb on - strand, within GFF2748at 449.127 kb on - strand, within GFF2748at 449.127 kb on - strand, within GFF2748at 449.138 kb on + strand, within GFF2748at 449.138 kb on + strand, within GFF2748at 449.138 kb on + strand, within GFF2748at 449.138 kb on + strand, within GFF2748at 449.138 kb on + strand, within GFF2748at 449.139 kb on - strand, within GFF2748at 449.139 kb on - strand, within GFF2748at 449.139 kb on - strand, within GFF2748at 449.195 kb on + strand, within GFF2748at 449.195 kb on + strand, within GFF2748at 449.195 kb on + strand, within GFF2748at 449.196 kb on - strand, within GFF2748at 449.249 kb on - strand, within GFF2748at 449.345 kb on + strand, within GFF2748at 449.376 kb on - strand, within GFF2748at 449.397 kb on - strand, within GFF2748at 449.480 kb on + strand, within GFF2748at 449.480 kb on + strand, within GFF2748at 449.481 kb on - strand, within GFF2748at 449.481 kb on - strand, within GFF2748at 449.481 kb on - strand, within GFF2748at 449.571 kb on - strand, within GFF2748at 449.583 kb on + strand, within GFF2748at 449.583 kb on + strand, within GFF2748at 449.583 kb on + strand, within GFF2748at 449.583 kb on + strand, within GFF2748at 449.584 kb on - strand, within GFF2748at 449.584 kb on - strand, within GFF2748at 449.585 kb on + strand, within GFF2748at 449.585 kb on + strand, within GFF2748at 449.585 kb on + strand, within GFF2748at 449.586 kb on - strand, within GFF2748at 449.586 kb on - strand, within GFF2748at 449.586 kb on - strand, within GFF2748at 449.586 kb on - strand, within GFF2748at 449.615 kb on + strand, within GFF2748at 449.616 kb on - strand, within GFF2748at 449.616 kb on - strand, within GFF2748at 449.616 kb on - strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.650 kb on + strand, within GFF2748at 449.651 kb on - strand, within GFF2748at 449.651 kb on - strand, within GFF2748at 449.651 kb on - strand, within GFF2748at 449.651 kb on - strand, within GFF2748at 449.651 kb on - strand, within GFF2748at 449.672 kb on + strand, within GFF2748at 449.673 kb on - strand, within GFF2748at 449.673 kb on - strand, within GFF2748at 449.673 kb on - strand, within GFF2748at 449.673 kb on - strand, within GFF2748at 449.790 kb on - strand, within GFF2748at 449.790 kb on - strand, within GFF2748at 449.858 kb on + strand, within GFF2748at 449.858 kb on + strand, within GFF2748at 449.858 kb on + strand, within GFF2748at 449.859 kb on - strand, within GFF2748at 449.859 kb on - strand, within GFF2748at 449.859 kb on - strand, within GFF2748at 449.859 kb on - strand, within GFF2748at 450.173 kb on + strandat 450.174 kb on - strandat 450.228 kb on - strandat 450.346 kb on + strandat 450.347 kb on - strandat 450.462 kb on + strandat 450.463 kb on - strandat 450.551 kb on - strandat 450.635 kb on + strandat 450.663 kb on + strandat 450.663 kb on + strandat 450.663 kb on + strandat 450.664 kb on - strandat 450.718 kb on - strandat 450.718 kb on - strandat 450.720 kb on + strandat 450.720 kb on + strandat 450.720 kb on + strandat 450.721 kb on - strandat 450.721 kb on - strandat 450.721 kb on - strandat 450.802 kb on + strandat 450.895 kb on + strandat 451.141 kb on + strand, within GFF2749at 451.142 kb on - strand, within GFF2749at 451.142 kb on - strand, within GFF2749at 451.364 kb on - strand, within GFF2749at 451.378 kb on + strand, within GFF2749

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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447,262 + GFF2747 0.55 -0.9
447,263 - GFF2747 0.55 +0.8
447,283 + GFF2747 0.56 +0.4
447,283 + GFF2747 0.56 +0.1
447,284 - GFF2747 0.56 +0.6
447,520 + GFF2747 0.72 -0.8
447,569 + GFF2747 0.75 -0.1
447,569 + GFF2747 0.75 +0.7
447,569 + GFF2747 0.75 -0.5
447,634 + GFF2747 0.79 +0.4
447,646 + GFF2747 0.80 +0.7
447,647 - GFF2747 0.80 -1.1
447,647 - GFF2747 0.80 +0.9
447,668 + GFF2747 0.81 -0.1
447,668 + GFF2747 0.81 -1.6
447,711 - GFF2747 0.84 -0.1
447,757 + GFF2747 0.87 +0.2
447,758 - GFF2747 0.87 +0.8
447,807 - -0.3
447,825 + +0.6
447,825 + -0.1
447,825 + +0.4
447,826 - +0.6
447,826 - +0.2
447,844 + -0.9
447,844 + +0.2
447,844 + -2.3
447,845 - -1.4
448,010 - -1.3
448,111 + -0.8
448,111 + +0.6
448,165 + -0.2
448,166 - -0.3
448,264 + +0.6
448,264 + -1.1
448,264 + -0.5
448,265 - -1.4
448,265 - +1.1
448,268 + -0.2
448,268 + +0.8
448,268 + -0.4
448,269 - -0.8
448,269 - -0.6
448,269 - -1.4
448,269 - -0.4
448,271 + -0.1
448,271 + +0.3
448,271 + -0.6
448,271 + +0.3
448,272 - +0.3
448,352 + +1.3
448,353 - +1.0
448,353 - +0.8
448,353 - +1.4
448,379 + -0.4
448,380 - -0.4
448,380 - +1.0
448,380 - -1.1
448,380 - +1.8
448,487 + GFF2748 0.14 -0.3
448,544 + GFF2748 0.16 -1.2
448,544 + GFF2748 0.16 +0.5
448,545 - GFF2748 0.16 +0.3
448,545 - GFF2748 0.16 +0.9
448,545 - GFF2748 0.16 +0.9
448,545 - GFF2748 0.16 +1.8
448,577 + GFF2748 0.18 +0.4
448,583 + GFF2748 0.18 -0.5
448,584 - GFF2748 0.18 -0.7
448,700 + GFF2748 0.24 +0.6
448,700 + GFF2748 0.24 -1.7
448,700 + GFF2748 0.24 -1.6
448,700 + GFF2748 0.24 +0.4
448,700 + GFF2748 0.24 -0.1
448,701 - GFF2748 0.24 +0.5
448,701 - GFF2748 0.24 +1.4
448,701 - GFF2748 0.24 +1.0
448,785 - GFF2748 0.27 +0.2
448,833 - GFF2748 0.30 +0.1
448,859 + GFF2748 0.31 +0.0
448,860 - GFF2748 0.31 +0.4
448,868 + GFF2748 0.31 +1.1
448,868 + GFF2748 0.31 -0.7
448,868 + GFF2748 0.31 -0.0
448,868 + GFF2748 0.31 +0.6
448,869 - GFF2748 0.31 +0.3
448,895 + GFF2748 0.32 +1.4
448,895 + GFF2748 0.32 -2.2
448,895 + GFF2748 0.32 -0.4
448,896 - GFF2748 0.32 -0.6
448,941 + GFF2748 0.35 +0.1
448,941 + GFF2748 0.35 -0.1
448,941 + GFF2748 0.35 +1.1
448,982 + GFF2748 0.36 -0.0
448,991 + GFF2748 0.37 +0.0
448,991 + GFF2748 0.37 -0.3
448,991 + GFF2748 0.37 +0.4
448,991 + GFF2748 0.37 -0.5
448,991 + GFF2748 0.37 +0.6
448,991 + GFF2748 0.37 +0.0
448,991 + GFF2748 0.37 +0.4
448,992 - GFF2748 0.37 +0.3
448,992 - GFF2748 0.37 -0.5
448,992 - GFF2748 0.37 +0.6
448,992 - GFF2748 0.37 +0.2
449,057 + GFF2748 0.40 -0.3
449,057 + GFF2748 0.40 +0.0
449,057 + GFF2748 0.40 +2.6
449,058 - GFF2748 0.40 +0.8
449,126 + GFF2748 0.43 -0.1
449,126 + GFF2748 0.43 +0.4
449,126 + GFF2748 0.43 -0.4
449,127 - GFF2748 0.43 +0.3
449,127 - GFF2748 0.43 +0.6
449,127 - GFF2748 0.43 +0.2
449,138 + GFF2748 0.43 +0.1
449,138 + GFF2748 0.43 -0.8
449,138 + GFF2748 0.43 +1.1
449,138 + GFF2748 0.43 +0.1
449,138 + GFF2748 0.43 -0.9
449,139 - GFF2748 0.44 +0.6
449,139 - GFF2748 0.44 -1.3
449,139 - GFF2748 0.44 -0.0
449,195 + GFF2748 0.46 +0.3
449,195 + GFF2748 0.46 -1.1
449,195 + GFF2748 0.46 -0.0
449,196 - GFF2748 0.46 +1.5
449,249 - GFF2748 0.49 +0.3
449,345 + GFF2748 0.53 -0.3
449,376 - GFF2748 0.54 +1.0
449,397 - GFF2748 0.55 -1.8
449,480 + GFF2748 0.59 +0.2
449,480 + GFF2748 0.59 +1.5
449,481 - GFF2748 0.59 -1.0
449,481 - GFF2748 0.59 +0.0
449,481 - GFF2748 0.59 +1.6
449,571 - GFF2748 0.63 -0.2
449,583 + GFF2748 0.64 -0.6
449,583 + GFF2748 0.64 +0.8
449,583 + GFF2748 0.64 +0.1
449,583 + GFF2748 0.64 +1.4
449,584 - GFF2748 0.64 -1.9
449,584 - GFF2748 0.64 +1.0
449,585 + GFF2748 0.64 -0.2
449,585 + GFF2748 0.64 +0.3
449,585 + GFF2748 0.64 -0.2
449,586 - GFF2748 0.64 +0.5
449,586 - GFF2748 0.64 -0.1
449,586 - GFF2748 0.64 -0.7
449,586 - GFF2748 0.64 -0.4
449,615 + GFF2748 0.65 +0.2
449,616 - GFF2748 0.65 -0.2
449,616 - GFF2748 0.65 -0.2
449,616 - GFF2748 0.65 +0.6
449,650 + GFF2748 0.67 +0.2
449,650 + GFF2748 0.67 -0.4
449,650 + GFF2748 0.67 -1.4
449,650 + GFF2748 0.67 -1.0
449,650 + GFF2748 0.67 +1.3
449,650 + GFF2748 0.67 +0.7
449,651 - GFF2748 0.67 +0.9
449,651 - GFF2748 0.67 +0.8
449,651 - GFF2748 0.67 -0.5
449,651 - GFF2748 0.67 -0.1
449,651 - GFF2748 0.67 -1.2
449,672 + GFF2748 0.68 -0.2
449,673 - GFF2748 0.68 +0.3
449,673 - GFF2748 0.68 -1.0
449,673 - GFF2748 0.68 +0.3
449,673 - GFF2748 0.68 +0.9
449,790 - GFF2748 0.73 -1.9
449,790 - GFF2748 0.73 +0.3
449,858 + GFF2748 0.76 -0.9
449,858 + GFF2748 0.76 +0.1
449,858 + GFF2748 0.76 -0.1
449,859 - GFF2748 0.76 +0.4
449,859 - GFF2748 0.76 +0.0
449,859 - GFF2748 0.76 +1.5
449,859 - GFF2748 0.76 -0.7
450,173 + -0.4
450,174 - +0.6
450,228 - -0.1
450,346 + +0.1
450,347 - +0.3
450,462 + +0.2
450,463 - +0.6
450,551 - -0.1
450,635 + +0.4
450,663 + -0.3
450,663 + +0.4
450,663 + -0.7
450,664 - -0.2
450,718 - -0.2
450,718 - -0.2
450,720 + -0.9
450,720 + +0.6
450,720 + -0.8
450,721 - -0.3
450,721 - -0.1
450,721 - +0.4
450,802 + -1.2
450,895 + -0.7
451,141 + GFF2749 0.39 -0.7
451,142 - GFF2749 0.39 -0.8
451,142 - GFF2749 0.39 +0.6
451,364 - GFF2749 0.65 -0.5
451,378 + GFF2749 0.67 -0.0

Or see this region's nucleotide sequence