Strain Fitness in Xanthobacter sp. DMC5 around GFF2730

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2728 and GFF2729 are separated by 5 nucleotidesGFF2729 and GFF2730 are separated by 26 nucleotidesGFF2730 and GFF2731 overlap by 140 nucleotides GFF2728 - hypothetical protein, at 421,664 to 422,242 GFF2728 GFF2729 - hypothetical protein, at 422,248 to 422,832 GFF2729 GFF2730 - Enamidase, at 422,859 to 424,064 GFF2730 GFF2731 - hypothetical protein, at 423,925 to 425,160 GFF2731 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.970 kb on + strand, within GFF2728at 421.971 kb on - strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.291 kb on + strandat 422.377 kb on + strand, within GFF2729at 422.377 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.457 kb on - strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.551 kb on - strand, within GFF2729at 422.910 kb on - strandat 422.960 kb on + strandat 422.960 kb on + strandat 422.961 kb on - strandat 423.424 kb on + strand, within GFF2730at 423.441 kb on + strand, within GFF2730at 423.442 kb on - strand, within GFF2730at 423.459 kb on - strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.626 kb on - strand, within GFF2730at 423.626 kb on - strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.630 kb on - strand, within GFF2730at 423.935 kb on + strandat 423.935 kb on + strandat 423.935 kb on + strandat 423.935 kb on + strandat 423.935 kb on + strandat 423.935 kb on + strandat 423.936 kb on - strandat 423.936 kb on - strandat 423.936 kb on - strandat 423.936 kb on - strandat 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.082 kb on + strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.083 kb on - strand, within GFF2731at 424.161 kb on + strand, within GFF2731at 424.161 kb on + strand, within GFF2731at 424.161 kb on + strand, within GFF2731at 424.162 kb on - strand, within GFF2731at 424.162 kb on - strand, within GFF2731at 424.233 kb on + strand, within GFF2731at 424.233 kb on + strand, within GFF2731at 424.234 kb on - strand, within GFF2731at 424.296 kb on + strand, within GFF2731at 424.296 kb on + strand, within GFF2731at 424.327 kb on - strand, within GFF2731at 424.350 kb on - strand, within GFF2731at 424.351 kb on + strand, within GFF2731at 424.352 kb on - strand, within GFF2731at 424.352 kb on - strand, within GFF2731at 424.354 kb on - strand, within GFF2731at 424.415 kb on + strand, within GFF2731at 424.415 kb on + strand, within GFF2731at 424.416 kb on - strand, within GFF2731at 424.416 kb on - strand, within GFF2731at 424.416 kb on - strand, within GFF2731at 424.559 kb on + strand, within GFF2731at 424.559 kb on + strand, within GFF2731at 424.559 kb on + strand, within GFF2731at 424.559 kb on + strand, within GFF2731at 424.559 kb on + strand, within GFF2731at 424.560 kb on - strand, within GFF2731at 424.560 kb on - strand, within GFF2731at 424.560 kb on - strand, within GFF2731at 424.750 kb on + strand, within GFF2731at 424.752 kb on + strand, within GFF2731at 424.752 kb on + strand, within GFF2731at 424.752 kb on + strand, within GFF2731at 424.752 kb on + strand, within GFF2731at 424.752 kb on + strand, within GFF2731at 424.753 kb on - strand, within GFF2731at 424.753 kb on - strand, within GFF2731at 424.850 kb on + strand, within GFF2731at 424.850 kb on + strand, within GFF2731at 424.850 kb on + strand, within GFF2731at 424.850 kb on + strand, within GFF2731at 424.851 kb on - strand, within GFF2731at 424.851 kb on - strand, within GFF2731at 425.039 kb on + strandat 425.039 kb on + strandat 425.039 kb on + strandat 425.039 kb on + strandat 425.039 kb on + strandat 425.040 kb on - strandat 425.040 kb on - strandat 425.040 kb on - strandat 425.040 kb on - strandat 425.040 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
421,970 + GFF2728 0.53 -0.2
421,971 - GFF2728 0.53 +0.2
422,068 + GFF2728 0.70 +0.8
422,068 + GFF2728 0.70 +0.9
422,068 + GFF2728 0.70 +0.8
422,068 + GFF2728 0.70 +0.4
422,069 - GFF2728 0.70 -0.4
422,069 - GFF2728 0.70 -1.6
422,069 - GFF2728 0.70 +0.1
422,081 + GFF2728 0.72 +1.2
422,081 + GFF2728 0.72 +0.3
422,081 + GFF2728 0.72 +0.0
422,081 + GFF2728 0.72 -0.5
422,081 + GFF2728 0.72 -1.9
422,081 + GFF2728 0.72 -0.1
422,081 + GFF2728 0.72 -0.2
422,082 - GFF2728 0.72 -0.6
422,082 - GFF2728 0.72 -0.2
422,082 - GFF2728 0.72 -3.0
422,291 + -0.3
422,377 + GFF2729 0.22 -1.9
422,377 + GFF2729 0.22 -0.7
422,456 + GFF2729 0.36 +0.2
422,456 + GFF2729 0.36 -1.2
422,456 + GFF2729 0.36 +0.6
422,457 - GFF2729 0.36 -0.1
422,485 + GFF2729 0.41 +0.3
422,485 + GFF2729 0.41 +2.0
422,485 + GFF2729 0.41 -0.8
422,486 - GFF2729 0.41 -0.1
422,486 - GFF2729 0.41 +0.8
422,504 + GFF2729 0.44 +0.3
422,504 + GFF2729 0.44 -0.3
422,550 + GFF2729 0.52 +0.0
422,550 + GFF2729 0.52 +0.5
422,550 + GFF2729 0.52 +0.8
422,550 + GFF2729 0.52 -1.7
422,551 - GFF2729 0.52 -0.2
422,910 - +0.0
422,960 + +0.2
422,960 + +2.4
422,961 - -1.2
423,424 + GFF2730 0.47 +0.7
423,441 + GFF2730 0.48 +0.7
423,442 - GFF2730 0.48 +0.0
423,459 - GFF2730 0.50 +0.5
423,625 + GFF2730 0.64 +0.7
423,625 + GFF2730 0.64 -2.3
423,625 + GFF2730 0.64 -0.6
423,625 + GFF2730 0.64 -0.5
423,625 + GFF2730 0.64 -0.4
423,626 - GFF2730 0.64 -0.8
423,626 - GFF2730 0.64 +0.3
423,629 + GFF2730 0.64 +0.2
423,629 + GFF2730 0.64 +1.1
423,629 + GFF2730 0.64 +2.0
423,630 - GFF2730 0.64 +1.2
423,935 + -0.2
423,935 + +0.4
423,935 + -1.7
423,935 + -0.5
423,935 + +0.5
423,935 + -1.0
423,936 - +0.4
423,936 - -0.2
423,936 - -0.9
423,936 - -0.4
424,082 + GFF2731 0.13 +0.4
424,082 + GFF2731 0.13 -0.7
424,082 + GFF2731 0.13 +0.3
424,082 + GFF2731 0.13 +0.3
424,082 + GFF2731 0.13 -1.3
424,082 + GFF2731 0.13 +0.5
424,082 + GFF2731 0.13 -1.3
424,082 + GFF2731 0.13 +1.3
424,082 + GFF2731 0.13 -0.7
424,082 + GFF2731 0.13 -0.8
424,082 + GFF2731 0.13 -0.6
424,083 - GFF2731 0.13 -0.5
424,083 - GFF2731 0.13 -0.2
424,083 - GFF2731 0.13 -1.9
424,083 - GFF2731 0.13 -0.3
424,083 - GFF2731 0.13 +0.5
424,083 - GFF2731 0.13 -1.7
424,083 - GFF2731 0.13 +0.4
424,161 + GFF2731 0.19 +0.0
424,161 + GFF2731 0.19 +0.2
424,161 + GFF2731 0.19 +0.9
424,162 - GFF2731 0.19 -0.7
424,162 - GFF2731 0.19 -0.5
424,233 + GFF2731 0.25 +0.1
424,233 + GFF2731 0.25 -0.3
424,234 - GFF2731 0.25 +0.5
424,296 + GFF2731 0.30 -0.3
424,296 + GFF2731 0.30 -0.8
424,327 - GFF2731 0.33 +0.1
424,350 - GFF2731 0.34 -0.4
424,351 + GFF2731 0.34 -1.2
424,352 - GFF2731 0.35 +0.3
424,352 - GFF2731 0.35 -0.7
424,354 - GFF2731 0.35 -1.1
424,415 + GFF2731 0.40 +0.1
424,415 + GFF2731 0.40 +0.4
424,416 - GFF2731 0.40 +0.7
424,416 - GFF2731 0.40 -0.1
424,416 - GFF2731 0.40 +0.2
424,559 + GFF2731 0.51 -0.9
424,559 + GFF2731 0.51 -0.7
424,559 + GFF2731 0.51 -0.1
424,559 + GFF2731 0.51 -0.9
424,559 + GFF2731 0.51 +0.3
424,560 - GFF2731 0.51 +1.4
424,560 - GFF2731 0.51 -0.1
424,560 - GFF2731 0.51 +0.4
424,750 + GFF2731 0.67 +0.2
424,752 + GFF2731 0.67 -1.2
424,752 + GFF2731 0.67 +0.8
424,752 + GFF2731 0.67 -0.1
424,752 + GFF2731 0.67 +0.8
424,752 + GFF2731 0.67 +0.5
424,753 - GFF2731 0.67 +1.0
424,753 - GFF2731 0.67 +1.2
424,850 + GFF2731 0.75 -0.2
424,850 + GFF2731 0.75 +0.2
424,850 + GFF2731 0.75 +2.0
424,850 + GFF2731 0.75 -0.8
424,851 - GFF2731 0.75 +0.5
424,851 - GFF2731 0.75 +0.8
425,039 + +1.0
425,039 + +0.1
425,039 + -0.6
425,039 + +0.4
425,039 + -0.8
425,040 - +0.3
425,040 - -1.0
425,040 - +0.5
425,040 - +0.0
425,040 - -0.5

Or see this region's nucleotide sequence