Strain Fitness in Xanthobacter sp. DMC5 around GFF2729

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2727 and GFF2728 are separated by 27 nucleotidesGFF2728 and GFF2729 are separated by 5 nucleotidesGFF2729 and GFF2730 are separated by 26 nucleotides GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636 GFF2727 GFF2728 - hypothetical protein, at 421,664 to 422,242 GFF2728 GFF2729 - hypothetical protein, at 422,248 to 422,832 GFF2729 GFF2730 - Enamidase, at 422,859 to 424,064 GFF2730 Position (kb) 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.538 kb on + strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.645 kb on + strandat 421.645 kb on + strandat 421.645 kb on + strandat 421.791 kb on - strand, within GFF2728at 421.970 kb on + strand, within GFF2728at 421.971 kb on - strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.291 kb on + strandat 422.377 kb on + strand, within GFF2729at 422.377 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.457 kb on - strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.551 kb on - strand, within GFF2729at 422.910 kb on - strandat 422.960 kb on + strandat 422.960 kb on + strandat 422.961 kb on - strandat 423.424 kb on + strand, within GFF2730at 423.441 kb on + strand, within GFF2730at 423.442 kb on - strand, within GFF2730at 423.459 kb on - strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.625 kb on + strand, within GFF2730at 423.626 kb on - strand, within GFF2730at 423.626 kb on - strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.629 kb on + strand, within GFF2730at 423.630 kb on - strand, within GFF2730

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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421,296 - GFF2727 0.57 +1.7
421,296 - GFF2727 0.57 -0.7
421,296 - GFF2727 0.57 -0.4
421,296 - GFF2727 0.57 +0.0
421,296 - GFF2727 0.57 +0.2
421,296 - GFF2727 0.57 -1.2
421,296 - GFF2727 0.57 +0.3
421,538 + GFF2727 0.87 +0.8
421,539 - GFF2727 0.88 -0.5
421,539 - GFF2727 0.88 -0.1
421,645 + +0.0
421,645 + -1.5
421,645 + +0.2
421,791 - GFF2728 0.22 -1.3
421,970 + GFF2728 0.53 -0.2
421,971 - GFF2728 0.53 +0.2
422,068 + GFF2728 0.70 +0.8
422,068 + GFF2728 0.70 +0.9
422,068 + GFF2728 0.70 +0.8
422,068 + GFF2728 0.70 +0.4
422,069 - GFF2728 0.70 -0.4
422,069 - GFF2728 0.70 -1.6
422,069 - GFF2728 0.70 +0.1
422,081 + GFF2728 0.72 +1.2
422,081 + GFF2728 0.72 +0.3
422,081 + GFF2728 0.72 +0.0
422,081 + GFF2728 0.72 -0.5
422,081 + GFF2728 0.72 -1.9
422,081 + GFF2728 0.72 -0.1
422,081 + GFF2728 0.72 -0.2
422,082 - GFF2728 0.72 -0.6
422,082 - GFF2728 0.72 -0.2
422,082 - GFF2728 0.72 -3.0
422,291 + -0.3
422,377 + GFF2729 0.22 -1.9
422,377 + GFF2729 0.22 -0.7
422,456 + GFF2729 0.36 +0.2
422,456 + GFF2729 0.36 -1.2
422,456 + GFF2729 0.36 +0.6
422,457 - GFF2729 0.36 -0.1
422,485 + GFF2729 0.41 +0.3
422,485 + GFF2729 0.41 +2.0
422,485 + GFF2729 0.41 -0.8
422,486 - GFF2729 0.41 -0.1
422,486 - GFF2729 0.41 +0.8
422,504 + GFF2729 0.44 +0.3
422,504 + GFF2729 0.44 -0.3
422,550 + GFF2729 0.52 +0.0
422,550 + GFF2729 0.52 +0.5
422,550 + GFF2729 0.52 +0.8
422,550 + GFF2729 0.52 -1.7
422,551 - GFF2729 0.52 -0.2
422,910 - +0.0
422,960 + +0.2
422,960 + +2.4
422,961 - -1.2
423,424 + GFF2730 0.47 +0.7
423,441 + GFF2730 0.48 +0.7
423,442 - GFF2730 0.48 +0.0
423,459 - GFF2730 0.50 +0.5
423,625 + GFF2730 0.64 +0.7
423,625 + GFF2730 0.64 -2.3
423,625 + GFF2730 0.64 -0.6
423,625 + GFF2730 0.64 -0.5
423,625 + GFF2730 0.64 -0.4
423,626 - GFF2730 0.64 -0.8
423,626 - GFF2730 0.64 +0.3
423,629 + GFF2730 0.64 +0.2
423,629 + GFF2730 0.64 +1.1
423,629 + GFF2730 0.64 +2.0
423,630 - GFF2730 0.64 +1.2

Or see this region's nucleotide sequence