Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2724 and GFF2725 are separated by 5 nucleotides GFF2725 and GFF2726 are separated by 5 nucleotides GFF2726 and GFF2727 are separated by 10 nucleotides
GFF2724 - Putrescine-binding periplasmic protein, at 417,744 to 418,820
GFF2724
GFF2725 - Vitamin B12 import ATP-binding protein BtuD, at 418,826 to 419,971
GFF2725
GFF2726 - hypothetical protein, at 419,977 to 420,837
GFF2726
GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636
GFF2727
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2 at 417.898 kb on - strand, within GFF2724 at 417.898 kb on - strand, within GFF2724 at 417.956 kb on + strand, within GFF2724 at 417.957 kb on - strand, within GFF2724 at 417.957 kb on - strand, within GFF2724 at 417.960 kb on + strand, within GFF2724 at 417.960 kb on + strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 418.299 kb on + strand, within GFF2724 at 418.413 kb on + strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.546 kb on + strand, within GFF2724 at 418.560 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.798 kb on - strand at 418.798 kb on - strand at 418.799 kb on + strand at 418.800 kb on - strand at 418.800 kb on - strand at 418.861 kb on + strand at 418.915 kb on + strand at 418.915 kb on + strand at 418.915 kb on + strand at 418.916 kb on - strand at 418.916 kb on - strand at 418.942 kb on - strand, within GFF2725 at 419.055 kb on - strand, within GFF2725 at 419.055 kb on - strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.136 kb on - strand, within GFF2725 at 419.177 kb on + strand, within GFF2725 at 419.178 kb on - strand, within GFF2725 at 419.436 kb on - strand, within GFF2725 at 419.549 kb on + strand, within GFF2725 at 419.550 kb on - strand, within GFF2725 at 419.925 kb on - strand at 419.925 kb on - strand at 420.086 kb on - strand, within GFF2726 at 420.086 kb on - strand, within GFF2726 at 420.086 kb on - strand, within GFF2726 at 420.107 kb on + strand, within GFF2726 at 420.108 kb on - strand, within GFF2726 at 420.136 kb on + strand, within GFF2726 at 420.160 kb on + strand, within GFF2726 at 420.160 kb on + strand, within GFF2726 at 420.160 kb on + strand, within GFF2726 at 420.160 kb on + strand, within GFF2726 at 420.160 kb on + strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.161 kb on - strand, within GFF2726 at 420.163 kb on + strand, within GFF2726 at 420.163 kb on + strand, within GFF2726 at 420.163 kb on + strand, within GFF2726 at 420.164 kb on - strand, within GFF2726 at 420.164 kb on - strand, within GFF2726 at 420.232 kb on + strand, within GFF2726 at 420.232 kb on + strand, within GFF2726 at 420.310 kb on + strand, within GFF2726 at 420.310 kb on + strand, within GFF2726 at 420.310 kb on + strand, within GFF2726 at 420.310 kb on + strand, within GFF2726 at 420.311 kb on - strand, within GFF2726 at 420.311 kb on - strand, within GFF2726 at 420.344 kb on + strand, within GFF2726 at 420.344 kb on + strand, within GFF2726 at 420.345 kb on - strand, within GFF2726 at 420.345 kb on - strand, within GFF2726 at 420.345 kb on - strand, within GFF2726 at 420.463 kb on + strand, within GFF2726 at 420.646 kb on + strand, within GFF2726 at 420.646 kb on + strand, within GFF2726 at 420.646 kb on + strand, within GFF2726 at 420.646 kb on + strand, within GFF2726 at 420.647 kb on - strand, within GFF2726 at 420.672 kb on + strand, within GFF2726 at 420.706 kb on + strand, within GFF2726
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 417,898 - GFF2724 0.14 -0.1 417,898 - GFF2724 0.14 +0.1 417,956 + GFF2724 0.20 +0.2 417,957 - GFF2724 0.20 -0.4 417,957 - GFF2724 0.20 -0.7 417,960 + GFF2724 0.20 +0.1 417,960 + GFF2724 0.20 -0.6 417,961 - GFF2724 0.20 -0.1 417,961 - GFF2724 0.20 -0.7 417,961 - GFF2724 0.20 -1.2 418,299 + GFF2724 0.52 -0.3 418,413 + GFF2724 0.62 -0.3 418,414 - GFF2724 0.62 +0.4 418,414 - GFF2724 0.62 -0.8 418,414 - GFF2724 0.62 +0.8 418,546 + GFF2724 0.74 +1.8 418,560 + GFF2724 0.76 +0.7 418,611 + GFF2724 0.81 +0.2 418,611 + GFF2724 0.81 +0.9 418,611 + GFF2724 0.81 -0.8 418,798 - +0.5 418,798 - +0.8 418,799 + +1.0 418,800 - +0.2 418,800 - -0.2 418,861 + +0.7 418,915 + +0.5 418,915 + -0.4 418,915 + -0.4 418,916 - -0.7 418,916 - -0.3 418,942 - GFF2725 0.10 +0.8 419,055 - GFF2725 0.20 -0.2 419,055 - GFF2725 0.20 +0.4 419,135 + GFF2725 0.27 +0.1 419,135 + GFF2725 0.27 -1.2 419,135 + GFF2725 0.27 +0.1 419,135 + GFF2725 0.27 +0.8 419,136 - GFF2725 0.27 -1.0 419,177 + GFF2725 0.31 -0.6 419,178 - GFF2725 0.31 -1.1 419,436 - GFF2725 0.53 +0.5 419,549 + GFF2725 0.63 -0.7 419,550 - GFF2725 0.63 -0.9 419,925 - -0.1 419,925 - -0.0 420,086 - GFF2726 0.13 +0.3 420,086 - GFF2726 0.13 -0.2 420,086 - GFF2726 0.13 +0.0 420,107 + GFF2726 0.15 -1.4 420,108 - GFF2726 0.15 +0.7 420,136 + GFF2726 0.18 +0.2 420,160 + GFF2726 0.21 +0.8 420,160 + GFF2726 0.21 -0.1 420,160 + GFF2726 0.21 +0.4 420,160 + GFF2726 0.21 +0.4 420,160 + GFF2726 0.21 -0.2 420,161 - GFF2726 0.21 +1.1 420,161 - GFF2726 0.21 -0.0 420,161 - GFF2726 0.21 -0.2 420,161 - GFF2726 0.21 +0.2 420,161 - GFF2726 0.21 -0.3 420,161 - GFF2726 0.21 +0.3 420,161 - GFF2726 0.21 -1.3 420,161 - GFF2726 0.21 -0.1 420,161 - GFF2726 0.21 +1.0 420,163 + GFF2726 0.22 -0.3 420,163 + GFF2726 0.22 +0.4 420,163 + GFF2726 0.22 -0.1 420,164 - GFF2726 0.22 -0.3 420,164 - GFF2726 0.22 +0.1 420,232 + GFF2726 0.30 +1.0 420,232 + GFF2726 0.30 +0.5 420,310 + GFF2726 0.39 -0.6 420,310 + GFF2726 0.39 -0.3 420,310 + GFF2726 0.39 -0.6 420,310 + GFF2726 0.39 +1.7 420,311 - GFF2726 0.39 -0.6 420,311 - GFF2726 0.39 +0.7 420,344 + GFF2726 0.43 +0.2 420,344 + GFF2726 0.43 +0.0 420,345 - GFF2726 0.43 +1.3 420,345 - GFF2726 0.43 -0.5 420,345 - GFF2726 0.43 +0.2 420,463 + GFF2726 0.56 +0.2 420,646 + GFF2726 0.78 +0.0 420,646 + GFF2726 0.78 +0.4 420,646 + GFF2726 0.78 -0.6 420,646 + GFF2726 0.78 -1.3 420,647 - GFF2726 0.78 -0.3 420,672 + GFF2726 0.81 +0.0 420,706 + GFF2726 0.85 -0.9
Or see this region's nucleotide sequence