Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2723 and GFF2724 are separated by 59 nucleotides GFF2724 and GFF2725 are separated by 5 nucleotides
GFF2723 - D-galactarolactone cycloisomerase, at 416,581 to 417,684
GFF2723
GFF2724 - Putrescine-binding periplasmic protein, at 417,744 to 418,820
GFF2724
GFF2725 - Vitamin B12 import ATP-binding protein BtuD, at 418,826 to 419,971
GFF2725
Position (kb) 417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 416.807 kb on + strand, within GFF2723 at 416.878 kb on + strand, within GFF2723 at 416.882 kb on + strand, within GFF2723 at 416.927 kb on - strand, within GFF2723 at 416.968 kb on + strand, within GFF2723 at 416.968 kb on + strand, within GFF2723 at 416.969 kb on - strand, within GFF2723 at 416.969 kb on - strand, within GFF2723 at 417.120 kb on + strand, within GFF2723 at 417.606 kb on + strand at 417.607 kb on - strand at 417.648 kb on + strand at 417.752 kb on - strand at 417.755 kb on + strand at 417.756 kb on - strand at 417.898 kb on - strand, within GFF2724 at 417.898 kb on - strand, within GFF2724 at 417.956 kb on + strand, within GFF2724 at 417.957 kb on - strand, within GFF2724 at 417.957 kb on - strand, within GFF2724 at 417.960 kb on + strand, within GFF2724 at 417.960 kb on + strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 417.961 kb on - strand, within GFF2724 at 418.299 kb on + strand, within GFF2724 at 418.413 kb on + strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.414 kb on - strand, within GFF2724 at 418.546 kb on + strand, within GFF2724 at 418.560 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.611 kb on + strand, within GFF2724 at 418.798 kb on - strand at 418.798 kb on - strand at 418.799 kb on + strand at 418.800 kb on - strand at 418.800 kb on - strand at 418.861 kb on + strand at 418.915 kb on + strand at 418.915 kb on + strand at 418.915 kb on + strand at 418.916 kb on - strand at 418.916 kb on - strand at 418.942 kb on - strand, within GFF2725 at 419.055 kb on - strand, within GFF2725 at 419.055 kb on - strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.135 kb on + strand, within GFF2725 at 419.136 kb on - strand, within GFF2725 at 419.177 kb on + strand, within GFF2725 at 419.178 kb on - strand, within GFF2725 at 419.436 kb on - strand, within GFF2725 at 419.549 kb on + strand, within GFF2725 at 419.550 kb on - strand, within GFF2725
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 416,807 + GFF2723 0.20 -0.4 416,878 + GFF2723 0.27 +0.6 416,882 + GFF2723 0.27 -2.6 416,927 - GFF2723 0.31 -1.0 416,968 + GFF2723 0.35 -0.5 416,968 + GFF2723 0.35 -0.4 416,969 - GFF2723 0.35 -0.0 416,969 - GFF2723 0.35 +0.9 417,120 + GFF2723 0.49 -0.3 417,606 + -0.7 417,607 - -2.4 417,648 + -0.2 417,752 - -0.9 417,755 + -0.6 417,756 - -0.1 417,898 - GFF2724 0.14 -0.1 417,898 - GFF2724 0.14 +0.1 417,956 + GFF2724 0.20 +0.2 417,957 - GFF2724 0.20 -0.4 417,957 - GFF2724 0.20 -0.7 417,960 + GFF2724 0.20 +0.1 417,960 + GFF2724 0.20 -0.6 417,961 - GFF2724 0.20 -0.1 417,961 - GFF2724 0.20 -0.7 417,961 - GFF2724 0.20 -1.2 418,299 + GFF2724 0.52 -0.3 418,413 + GFF2724 0.62 -0.3 418,414 - GFF2724 0.62 +0.4 418,414 - GFF2724 0.62 -0.8 418,414 - GFF2724 0.62 +0.8 418,546 + GFF2724 0.74 +1.8 418,560 + GFF2724 0.76 +0.7 418,611 + GFF2724 0.81 +0.2 418,611 + GFF2724 0.81 +0.9 418,611 + GFF2724 0.81 -0.8 418,798 - +0.5 418,798 - +0.8 418,799 + +1.0 418,800 - +0.2 418,800 - -0.2 418,861 + +0.7 418,915 + +0.5 418,915 + -0.4 418,915 + -0.4 418,916 - -0.7 418,916 - -0.3 418,942 - GFF2725 0.10 +0.8 419,055 - GFF2725 0.20 -0.2 419,055 - GFF2725 0.20 +0.4 419,135 + GFF2725 0.27 +0.1 419,135 + GFF2725 0.27 -1.2 419,135 + GFF2725 0.27 +0.1 419,135 + GFF2725 0.27 +0.8 419,136 - GFF2725 0.27 -1.0 419,177 + GFF2725 0.31 -0.6 419,178 - GFF2725 0.31 -1.1 419,436 - GFF2725 0.53 +0.5 419,549 + GFF2725 0.63 -0.7 419,550 - GFF2725 0.63 -0.9
Or see this region's nucleotide sequence