Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2703 and GFF2704 are separated by 292 nucleotides GFF2704 and GFF2705 are separated by 562 nucleotides
GFF2703 - IS3 family transposase ISRle5, at 391,877 to 392,539
GFF2703
GFF2704 - putative RNA polymerase sigma factor FecI, at 392,832 to 393,338
GFF2704
GFF2705 - hypothetical protein, at 393,901 to 394,392
GFF2705
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 391.836 kb on + strand at 391.836 kb on + strand at 391.837 kb on - strand at 391.860 kb on + strand at 391.861 kb on - strand at 391.890 kb on - strand at 391.949 kb on + strand, within GFF2703 at 391.958 kb on + strand, within GFF2703 at 391.958 kb on + strand, within GFF2703 at 391.958 kb on + strand, within GFF2703 at 391.959 kb on - strand, within GFF2703 at 391.959 kb on - strand, within GFF2703 at 392.291 kb on + strand, within GFF2703 at 392.291 kb on + strand, within GFF2703 at 392.292 kb on - strand, within GFF2703 at 392.351 kb on - strand, within GFF2703 at 392.544 kb on + strand at 392.544 kb on + strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.575 kb on + strand at 392.575 kb on + strand at 392.575 kb on + strand at 392.576 kb on - strand at 392.576 kb on - strand at 392.655 kb on - strand at 392.663 kb on + strand at 392.664 kb on - strand at 392.664 kb on - strand at 392.667 kb on + strand at 392.667 kb on + strand at 392.668 kb on - strand at 392.668 kb on - strand at 392.668 kb on - strand at 392.668 kb on - strand at 392.752 kb on + strand at 392.753 kb on - strand at 392.862 kb on + strand at 392.862 kb on + strand at 392.863 kb on - strand at 392.863 kb on - strand at 393.003 kb on + strand, within GFF2704 at 393.003 kb on + strand, within GFF2704 at 393.003 kb on + strand, within GFF2704 at 393.003 kb on + strand, within GFF2704 at 393.003 kb on + strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.004 kb on - strand, within GFF2704 at 393.158 kb on - strand, within GFF2704 at 393.294 kb on + strand at 393.336 kb on + strand at 393.336 kb on + strand at 393.336 kb on + strand at 393.336 kb on + strand at 393.337 kb on - strand at 393.337 kb on - strand at 393.337 kb on - strand at 393.337 kb on - strand at 393.389 kb on - strand at 393.489 kb on - strand at 394.037 kb on + strand, within GFF2705 at 394.038 kb on - strand, within GFF2705 at 394.191 kb on + strand, within GFF2705 at 394.191 kb on + strand, within GFF2705 at 394.192 kb on - strand, within GFF2705 at 394.192 kb on - strand, within GFF2705 at 394.192 kb on - strand, within GFF2705 at 394.192 kb on - strand, within GFF2705 at 394.192 kb on - strand, within GFF2705 at 394.336 kb on + strand, within GFF2705 at 394.336 kb on + strand, within GFF2705 at 394.336 kb on + strand, within GFF2705 at 394.337 kb on - strand, within GFF2705
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 391,836 + -0.3 391,836 + -0.6 391,837 - +1.0 391,860 + +1.3 391,861 - +0.6 391,890 - +2.7 391,949 + GFF2703 0.11 -0.1 391,958 + GFF2703 0.12 +0.2 391,958 + GFF2703 0.12 -1.2 391,958 + GFF2703 0.12 -0.6 391,959 - GFF2703 0.12 -1.4 391,959 - GFF2703 0.12 +0.1 392,291 + GFF2703 0.62 -0.7 392,291 + GFF2703 0.62 -0.8 392,292 - GFF2703 0.63 +0.2 392,351 - GFF2703 0.71 +0.9 392,544 + +1.4 392,544 + +0.9 392,545 - -0.2 392,545 - -2.2 392,575 + +0.3 392,575 + +0.7 392,575 + +1.0 392,576 - -0.9 392,576 - -0.3 392,655 - -0.5 392,663 + -0.1 392,664 - +0.2 392,664 - +0.1 392,667 + -0.7 392,667 + -1.3 392,668 - -1.3 392,668 - -0.2 392,668 - -0.8 392,668 - +1.3 392,752 + +0.3 392,753 - -0.3 392,862 + -0.5 392,862 + +0.6 392,863 - -0.8 392,863 - -0.7 393,003 + GFF2704 0.34 -1.2 393,003 + GFF2704 0.34 +0.4 393,003 + GFF2704 0.34 -0.7 393,003 + GFF2704 0.34 -0.1 393,003 + GFF2704 0.34 +0.1 393,004 - GFF2704 0.34 -0.7 393,004 - GFF2704 0.34 -0.5 393,004 - GFF2704 0.34 -0.5 393,004 - GFF2704 0.34 +0.8 393,004 - GFF2704 0.34 +0.4 393,004 - GFF2704 0.34 +0.6 393,158 - GFF2704 0.64 -0.6 393,294 + +0.4 393,336 + +0.2 393,336 + -0.0 393,336 + -0.3 393,336 + +0.4 393,337 - -0.1 393,337 - -0.6 393,337 - +0.3 393,337 - +0.5 393,389 - -0.8 393,489 - -1.6 394,037 + GFF2705 0.28 +0.1 394,038 - GFF2705 0.28 +1.5 394,191 + GFF2705 0.59 -1.2 394,191 + GFF2705 0.59 +0.3 394,192 - GFF2705 0.59 -0.8 394,192 - GFF2705 0.59 +0.2 394,192 - GFF2705 0.59 +1.0 394,192 - GFF2705 0.59 +0.4 394,192 - GFF2705 0.59 +1.7 394,336 + GFF2705 0.88 -0.2 394,336 + GFF2705 0.88 -0.4 394,336 + GFF2705 0.88 +0.5 394,337 - GFF2705 0.89 -0.2
Or see this region's nucleotide sequence