Strain Fitness in Xanthobacter sp. DMC5 around GFF2694

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2691 and GFF2692 overlap by 1 nucleotidesGFF2692 and GFF2693 overlap by 4 nucleotidesGFF2693 and GFF2694 overlap by 1 nucleotidesGFF2694 and GFF2695 are separated by 201 nucleotidesGFF2695 and GFF2696 are separated by 167 nucleotides GFF2691 - hypothetical protein, at 375,211 to 375,669 GFF2691 GFF2692 - hypothetical protein, at 375,669 to 376,181 GFF2692 GFF2693 - hypothetical protein, at 376,178 to 376,657 GFF2693 GFF2694 - hypothetical protein, at 376,657 to 377,070 GFF2694 GFF2695 - hypothetical protein, at 377,272 to 377,544 GFF2695 GFF2696 - hypothetical protein, at 377,712 to 378,461 GFF2696 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.777 kb on + strand, within GFF2692at 375.778 kb on - strand, within GFF2692at 375.865 kb on - strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.052 kb on - strand, within GFF2692at 376.179 kb on + strandat 376.193 kb on + strandat 376.193 kb on + strandat 376.193 kb on + strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.194 kb on - strandat 376.287 kb on + strand, within GFF2693at 376.287 kb on + strand, within GFF2693at 376.287 kb on + strand, within GFF2693at 376.288 kb on - strand, within GFF2693at 376.288 kb on - strand, within GFF2693at 376.288 kb on - strand, within GFF2693at 376.392 kb on + strand, within GFF2693at 376.440 kb on - strand, within GFF2693at 376.496 kb on - strand, within GFF2693at 376.496 kb on - strand, within GFF2693at 376.496 kb on - strand, within GFF2693at 376.499 kb on + strand, within GFF2693at 376.499 kb on + strand, within GFF2693at 376.499 kb on + strand, within GFF2693at 376.499 kb on + strand, within GFF2693at 376.500 kb on - strand, within GFF2693at 376.500 kb on - strand, within GFF2693at 376.581 kb on + strand, within GFF2693at 376.650 kb on + strandat 376.687 kb on + strandat 376.687 kb on + strandat 376.687 kb on + strandat 376.687 kb on + strandat 376.688 kb on - strandat 376.688 kb on - strandat 376.778 kb on + strand, within GFF2694at 376.778 kb on + strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 376.779 kb on - strand, within GFF2694at 377.018 kb on + strand, within GFF2694at 377.018 kb on + strand, within GFF2694at 377.019 kb on - strand, within GFF2694at 377.019 kb on - strand, within GFF2694at 377.213 kb on + strandat 377.273 kb on + strandat 377.273 kb on + strandat 377.274 kb on - strandat 377.282 kb on + strandat 377.292 kb on + strandat 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.483 kb on + strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.484 kb on - strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.515 kb on + strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.516 kb on - strand, within GFF2695at 377.649 kb on + strandat 377.649 kb on + strandat 377.650 kb on - strandat 377.711 kb on - strandat 377.809 kb on + strand, within GFF2696at 377.810 kb on - strand, within GFF2696at 377.910 kb on + strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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375,732 + GFF2692 0.12 -1.0
375,732 + GFF2692 0.12 -1.1
375,732 + GFF2692 0.12 +0.3
375,733 - GFF2692 0.12 +1.0
375,733 - GFF2692 0.12 -0.4
375,733 - GFF2692 0.12 -0.1
375,733 - GFF2692 0.12 -0.1
375,733 - GFF2692 0.12 -0.7
375,733 - GFF2692 0.12 +0.2
375,733 - GFF2692 0.12 -2.1
375,733 - GFF2692 0.12 +1.4
375,733 - GFF2692 0.12 +0.9
375,777 + GFF2692 0.21 -0.2
375,778 - GFF2692 0.21 -0.0
375,865 - GFF2692 0.38 +0.3
375,955 + GFF2692 0.56 -0.4
375,955 + GFF2692 0.56 -0.3
375,955 + GFF2692 0.56 +0.4
375,955 + GFF2692 0.56 -1.9
375,956 - GFF2692 0.56 +0.8
375,956 - GFF2692 0.56 -1.0
375,956 - GFF2692 0.56 -1.7
375,956 - GFF2692 0.56 -0.6
375,956 - GFF2692 0.56 -0.0
375,961 - GFF2692 0.57 -0.3
375,961 - GFF2692 0.57 -1.0
376,051 + GFF2692 0.74 +0.6
376,051 + GFF2692 0.74 +0.0
376,051 + GFF2692 0.74 +0.2
376,052 - GFF2692 0.75 -0.1
376,179 + +0.6
376,193 + -0.7
376,193 + +1.0
376,193 + -0.1
376,194 - +0.4
376,194 - +0.8
376,194 - -0.3
376,194 - +1.0
376,194 - -0.6
376,194 - -0.0
376,194 - +0.3
376,287 + GFF2693 0.23 -0.7
376,287 + GFF2693 0.23 -0.5
376,287 + GFF2693 0.23 -0.5
376,288 - GFF2693 0.23 -2.7
376,288 - GFF2693 0.23 +0.4
376,288 - GFF2693 0.23 -0.3
376,392 + GFF2693 0.45 +0.4
376,440 - GFF2693 0.55 +0.5
376,496 - GFF2693 0.66 +0.1
376,496 - GFF2693 0.66 +0.2
376,496 - GFF2693 0.66 -0.3
376,499 + GFF2693 0.67 -1.0
376,499 + GFF2693 0.67 -0.9
376,499 + GFF2693 0.67 -0.5
376,499 + GFF2693 0.67 -0.0
376,500 - GFF2693 0.67 +0.6
376,500 - GFF2693 0.67 -0.1
376,581 + GFF2693 0.84 -0.6
376,650 + -0.9
376,687 + -0.5
376,687 + -2.2
376,687 + +0.7
376,687 + -0.1
376,688 - -1.5
376,688 - -0.9
376,778 + GFF2694 0.29 +0.3
376,778 + GFF2694 0.29 +0.6
376,779 - GFF2694 0.29 -0.1
376,779 - GFF2694 0.29 +0.9
376,779 - GFF2694 0.29 -0.4
376,779 - GFF2694 0.29 -0.0
377,018 + GFF2694 0.87 -0.1
377,018 + GFF2694 0.87 -0.0
377,019 - GFF2694 0.87 -0.0
377,019 - GFF2694 0.87 -1.5
377,213 + +0.0
377,273 + -1.3
377,273 + -0.0
377,274 - -1.3
377,282 + -0.7
377,292 + +0.9
377,483 + GFF2695 0.77 +0.5
377,483 + GFF2695 0.77 -0.1
377,483 + GFF2695 0.77 -0.4
377,483 + GFF2695 0.77 +1.0
377,484 - GFF2695 0.78 -0.2
377,484 - GFF2695 0.78 +0.5
377,484 - GFF2695 0.78 +0.7
377,484 - GFF2695 0.78 +0.1
377,515 + GFF2695 0.89 +0.2
377,515 + GFF2695 0.89 +0.5
377,515 + GFF2695 0.89 -0.4
377,515 + GFF2695 0.89 -0.6
377,516 - GFF2695 0.89 -1.3
377,516 - GFF2695 0.89 -1.0
377,516 - GFF2695 0.89 -0.7
377,649 + -0.0
377,649 + +1.7
377,650 - +0.1
377,711 - -1.4
377,809 + GFF2696 0.13 -0.5
377,810 - GFF2696 0.13 +0.9
377,910 + GFF2696 0.26 -0.2
377,911 - GFF2696 0.27 +0.3
377,911 - GFF2696 0.27 -0.1
377,911 - GFF2696 0.27 -0.4
377,911 - GFF2696 0.27 +0.3
377,911 - GFF2696 0.27 -0.2

Or see this region's nucleotide sequence