Strain Fitness in Xanthobacter sp. DMC5 around GFF2681

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2680 and GFF2681 overlap by 4 nucleotidesGFF2681 and GFF2682 overlap by 4 nucleotides GFF2680 - hypothetical protein, at 363,695 to 364,789 GFF2680 GFF2681 - hypothetical protein, at 364,786 to 365,895 GFF2681 GFF2682 - D-inositol-3-phosphate glycosyltransferase, at 365,892 to 367,010 GFF2682 Position (kb) 364 365 366Strain fitness (log2 ratio) -2 -1 0 1at 364.068 kb on + strand, within GFF2680at 364.068 kb on + strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.326 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.725 kb on + strandat 364.729 kb on - strandat 364.729 kb on - strandat 364.729 kb on - strandat 364.750 kb on - strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.761 kb on - strandat 364.761 kb on - strandat 364.761 kb on - strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.774 kb on - strandat 364.844 kb on + strandat 364.844 kb on + strandat 364.845 kb on - strandat 364.845 kb on - strandat 364.845 kb on - strandat 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 365.099 kb on + strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.103 kb on - strand, within GFF2681at 365.180 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.477 kb on + strand, within GFF2681at 365.478 kb on - strand, within GFF2681at 365.536 kb on - strand, within GFF2681at 365.699 kb on + strand, within GFF2681at 365.703 kb on - strand, within GFF2681at 365.882 kb on + strandat 365.895 kb on + strandat 365.896 kb on - strandat 365.896 kb on - strandat 365.896 kb on - strandat 365.951 kb on - strandat 366.205 kb on + strand, within GFF2682at 366.206 kb on - strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.506 kb on - strand, within GFF2682

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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364,068 + GFF2680 0.34 -0.1
364,068 + GFF2680 0.34 -1.4
364,069 - GFF2680 0.34 +0.3
364,069 - GFF2680 0.34 +0.3
364,069 - GFF2680 0.34 +0.0
364,069 - GFF2680 0.34 +1.4
364,069 - GFF2680 0.34 +0.8
364,069 - GFF2680 0.34 -0.8
364,290 + GFF2680 0.54 +0.7
364,290 + GFF2680 0.54 -0.8
364,291 - GFF2680 0.54 -1.1
364,291 - GFF2680 0.54 -0.6
364,291 - GFF2680 0.54 +1.1
364,326 + GFF2680 0.58 -0.2
364,356 + GFF2680 0.60 +0.1
364,356 + GFF2680 0.60 -1.8
364,357 - GFF2680 0.60 -0.3
364,357 - GFF2680 0.60 -0.6
364,674 + GFF2680 0.89 -0.5
364,674 + GFF2680 0.89 +0.5
364,674 + GFF2680 0.89 -0.2
364,674 + GFF2680 0.89 +0.2
364,725 + +1.2
364,729 - -0.2
364,729 - -0.6
364,729 - +0.7
364,750 - -0.1
364,760 + +0.2
364,760 + -0.5
364,760 + +1.1
364,760 + +0.1
364,761 - -0.1
364,761 - -0.4
364,761 - +0.5
364,773 + -0.2
364,773 + +0.4
364,773 + +0.1
364,773 + +0.1
364,774 - -0.8
364,844 + +0.1
364,844 + -0.3
364,845 - +1.0
364,845 - -0.8
364,845 - +0.3
364,979 + GFF2681 0.17 -0.8
364,979 + GFF2681 0.17 -0.6
364,979 + GFF2681 0.17 +0.7
364,979 + GFF2681 0.17 -2.6
364,979 + GFF2681 0.17 +0.4
364,980 - GFF2681 0.17 -0.6
364,980 - GFF2681 0.17 -1.2
364,980 - GFF2681 0.17 +0.1
364,980 - GFF2681 0.17 -0.2
364,980 - GFF2681 0.17 +0.4
365,099 + GFF2681 0.28 +0.7
365,100 - GFF2681 0.28 +0.8
365,100 - GFF2681 0.28 +0.9
365,100 - GFF2681 0.28 +0.1
365,103 - GFF2681 0.29 +0.3
365,180 + GFF2681 0.35 +0.3
365,192 + GFF2681 0.37 -0.5
365,192 + GFF2681 0.37 -0.2
365,237 + GFF2681 0.41 +1.4
365,237 + GFF2681 0.41 -1.3
365,237 + GFF2681 0.41 -0.8
365,237 + GFF2681 0.41 -0.2
365,237 + GFF2681 0.41 -0.6
365,237 + GFF2681 0.41 -0.3
365,237 + GFF2681 0.41 -0.6
365,237 + GFF2681 0.41 -0.9
365,237 + GFF2681 0.41 -0.6
365,237 + GFF2681 0.41 +0.0
365,238 - GFF2681 0.41 -0.9
365,238 - GFF2681 0.41 -0.7
365,238 - GFF2681 0.41 -0.2
365,238 - GFF2681 0.41 +0.6
365,238 - GFF2681 0.41 -1.0
365,282 + GFF2681 0.45 +1.0
365,282 + GFF2681 0.45 -0.1
365,282 + GFF2681 0.45 -0.7
365,283 - GFF2681 0.45 -0.6
365,283 - GFF2681 0.45 +0.3
365,283 - GFF2681 0.45 -0.6
365,283 - GFF2681 0.45 +0.3
365,283 - GFF2681 0.45 +1.6
365,283 - GFF2681 0.45 +0.1
365,283 - GFF2681 0.45 +0.3
365,283 - GFF2681 0.45 -0.2
365,435 + GFF2681 0.58 +1.0
365,435 + GFF2681 0.58 -0.4
365,435 + GFF2681 0.58 +1.4
365,436 - GFF2681 0.59 +0.1
365,436 - GFF2681 0.59 -0.4
365,436 - GFF2681 0.59 -0.9
365,477 + GFF2681 0.62 +0.5
365,478 - GFF2681 0.62 +0.6
365,536 - GFF2681 0.68 -2.3
365,699 + GFF2681 0.82 +0.3
365,703 - GFF2681 0.83 -1.0
365,882 + -0.7
365,895 + -0.8
365,896 - +0.3
365,896 - -0.4
365,896 - -0.7
365,951 - -0.8
366,205 + GFF2682 0.28 -0.7
366,206 - GFF2682 0.28 -0.8
366,244 + GFF2682 0.31 +0.5
366,244 + GFF2682 0.31 +0.4
366,244 + GFF2682 0.31 -1.7
366,245 - GFF2682 0.32 +0.2
366,245 - GFF2682 0.32 -0.3
366,506 - GFF2682 0.55 -0.7

Or see this region's nucleotide sequence