Strain Fitness in Xanthobacter sp. DMC5 around GFF2663

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2662 and GFF2663 overlap by 1 nucleotidesGFF2663 and GFF2664 are separated by 156 nucleotidesGFF2664 and GFF2665 are separated by 4 nucleotides GFF2662 - hypothetical protein, at 346,669 to 347,958 GFF2662 GFF2663 - hypothetical protein, at 347,958 to 348,428 GFF2663 GFF2664 - hypothetical protein, at 348,585 to 349,331 GFF2664 GFF2665 - Gluconate 2-dehydrogenase flavoprotein, at 349,336 to 350,853 GFF2665 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 347.089 kb on + strand, within GFF2662at 347.089 kb on + strand, within GFF2662at 347.089 kb on + strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.090 kb on - strand, within GFF2662at 347.132 kb on - strand, within GFF2662at 347.132 kb on - strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.163 kb on + strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.164 kb on - strand, within GFF2662at 347.225 kb on - strand, within GFF2662at 347.351 kb on - strand, within GFF2662at 347.402 kb on - strand, within GFF2662at 347.514 kb on - strand, within GFF2662at 347.594 kb on + strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.597 kb on + strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.674 kb on + strand, within GFF2662at 347.675 kb on - strand, within GFF2662at 347.681 kb on + strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.771 kb on + strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.775 kb on + strand, within GFF2662at 347.775 kb on + strand, within GFF2662at 347.776 kb on - strand, within GFF2662at 347.834 kb on + strandat 347.836 kb on + strandat 347.837 kb on - strandat 347.965 kb on - strandat 347.965 kb on - strandat 347.966 kb on + strandat 347.966 kb on + strandat 347.966 kb on + strandat 347.967 kb on - strandat 347.967 kb on - strandat 347.976 kb on - strandat 347.979 kb on + strandat 347.979 kb on + strandat 347.980 kb on - strandat 347.980 kb on - strandat 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.039 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.215 kb on + strand, within GFF2663at 348.216 kb on - strand, within GFF2663at 348.216 kb on - strand, within GFF2663at 348.222 kb on + strand, within GFF2663at 348.223 kb on - strand, within GFF2663at 348.223 kb on - strand, within GFF2663at 348.328 kb on - strand, within GFF2663at 348.426 kb on + strandat 348.427 kb on - strandat 348.497 kb on + strandat 348.497 kb on + strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.543 kb on + strandat 348.543 kb on + strandat 348.544 kb on - strandat 348.544 kb on - strandat 348.753 kb on + strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.885 kb on + strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.179 kb on + strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.236 kb on + strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.254 kb on - strand, within GFF2664at 349.270 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
347,089 + GFF2662 0.33 -1.9
347,089 + GFF2662 0.33 -0.1
347,089 + GFF2662 0.33 -0.6
347,090 - GFF2662 0.33 -0.9
347,090 - GFF2662 0.33 -0.9
347,090 - GFF2662 0.33 -0.7
347,090 - GFF2662 0.33 +1.5
347,090 - GFF2662 0.33 -0.5
347,090 - GFF2662 0.33 -0.5
347,090 - GFF2662 0.33 +0.1
347,090 - GFF2662 0.33 -1.0
347,132 - GFF2662 0.36 +0.3
347,132 - GFF2662 0.36 -0.2
347,163 + GFF2662 0.38 +0.2
347,163 + GFF2662 0.38 +0.7
347,163 + GFF2662 0.38 -0.5
347,164 - GFF2662 0.38 -0.8
347,164 - GFF2662 0.38 +0.7
347,164 - GFF2662 0.38 -0.2
347,164 - GFF2662 0.38 +0.5
347,164 - GFF2662 0.38 -0.2
347,225 - GFF2662 0.43 -0.9
347,351 - GFF2662 0.53 -1.0
347,402 - GFF2662 0.57 -1.0
347,514 - GFF2662 0.66 +0.4
347,594 + GFF2662 0.72 +0.4
347,595 - GFF2662 0.72 -0.9
347,595 - GFF2662 0.72 -1.1
347,595 - GFF2662 0.72 +0.3
347,596 + GFF2662 0.72 +0.5
347,596 + GFF2662 0.72 -1.7
347,596 + GFF2662 0.72 +0.1
347,596 + GFF2662 0.72 +0.3
347,596 + GFF2662 0.72 +0.7
347,596 + GFF2662 0.72 -1.5
347,597 + GFF2662 0.72 -0.6
347,597 - GFF2662 0.72 -0.8
347,597 - GFF2662 0.72 -1.2
347,597 - GFF2662 0.72 -0.4
347,597 - GFF2662 0.72 +0.8
347,597 - GFF2662 0.72 +0.7
347,597 - GFF2662 0.72 -0.5
347,674 + GFF2662 0.78 -0.4
347,675 - GFF2662 0.78 -0.6
347,681 + GFF2662 0.78 +0.2
347,682 - GFF2662 0.79 -2.5
347,682 - GFF2662 0.79 +0.7
347,682 - GFF2662 0.79 -0.0
347,771 + GFF2662 0.85 -0.8
347,772 - GFF2662 0.86 +0.1
347,772 - GFF2662 0.86 -0.5
347,772 - GFF2662 0.86 +0.3
347,775 + GFF2662 0.86 -1.3
347,775 + GFF2662 0.86 -0.2
347,776 - GFF2662 0.86 +1.0
347,834 + +0.2
347,836 + -0.0
347,837 - +0.1
347,965 - -0.8
347,965 - -0.6
347,966 + -0.3
347,966 + +0.2
347,966 + -0.0
347,967 - -1.7
347,967 - -0.3
347,976 - -0.1
347,979 + -0.5
347,979 + +0.6
347,980 - -0.9
347,980 - +0.3
348,038 + GFF2663 0.17 +0.2
348,038 + GFF2663 0.17 +0.2
348,038 + GFF2663 0.17 -0.0
348,038 + GFF2663 0.17 +0.7
348,038 + GFF2663 0.17 +0.6
348,038 + GFF2663 0.17 +0.7
348,039 - GFF2663 0.17 -0.1
348,181 - GFF2663 0.47 +0.9
348,181 - GFF2663 0.47 -0.9
348,181 - GFF2663 0.47 -0.4
348,215 + GFF2663 0.55 -0.3
348,216 - GFF2663 0.55 +1.4
348,216 - GFF2663 0.55 -0.5
348,222 + GFF2663 0.56 -0.3
348,223 - GFF2663 0.56 +0.8
348,223 - GFF2663 0.56 +0.3
348,328 - GFF2663 0.79 +0.4
348,426 + -0.2
348,427 - +2.0
348,497 + -0.8
348,497 + -0.7
348,498 - -0.0
348,498 - +0.2
348,498 - -0.1
348,543 + +0.0
348,543 + -0.1
348,544 - -0.5
348,544 - -1.6
348,753 + GFF2664 0.22 +0.3
348,754 - GFF2664 0.23 -1.1
348,754 - GFF2664 0.23 +1.4
348,754 - GFF2664 0.23 -0.3
348,754 - GFF2664 0.23 +1.2
348,885 + GFF2664 0.40 +2.0
348,886 - GFF2664 0.40 +0.3
348,886 - GFF2664 0.40 -0.3
348,906 + GFF2664 0.43 -0.2
348,906 + GFF2664 0.43 +0.1
348,906 + GFF2664 0.43 -0.5
348,906 + GFF2664 0.43 -0.3
348,906 + GFF2664 0.43 +0.4
348,906 + GFF2664 0.43 -1.0
348,906 + GFF2664 0.43 -0.0
348,906 + GFF2664 0.43 -0.0
348,907 - GFF2664 0.43 -0.4
348,907 - GFF2664 0.43 -0.1
348,907 - GFF2664 0.43 -0.7
348,907 - GFF2664 0.43 +0.7
348,907 - GFF2664 0.43 -0.7
348,907 - GFF2664 0.43 +0.9
348,907 - GFF2664 0.43 +0.4
348,907 - GFF2664 0.43 -1.1
348,907 - GFF2664 0.43 +0.1
348,907 - GFF2664 0.43 -0.1
348,907 - GFF2664 0.43 +0.2
349,008 + GFF2664 0.57 -0.3
349,008 + GFF2664 0.57 +1.7
349,009 - GFF2664 0.57 +0.4
349,009 - GFF2664 0.57 -0.1
349,009 - GFF2664 0.57 +0.1
349,179 + GFF2664 0.80 -0.9
349,180 - GFF2664 0.80 +0.5
349,180 - GFF2664 0.80 +1.5
349,180 - GFF2664 0.80 +0.5
349,180 - GFF2664 0.80 +1.5
349,236 + GFF2664 0.87 -1.9
349,237 - GFF2664 0.87 -0.2
349,237 - GFF2664 0.87 -0.6
349,237 - GFF2664 0.87 +0.7
349,252 - GFF2664 0.89 -0.3
349,252 - GFF2664 0.89 -0.7
349,252 - GFF2664 0.89 -0.6
349,252 - GFF2664 0.89 -1.0
349,253 + GFF2664 0.89 -0.3
349,253 + GFF2664 0.89 +0.1
349,253 + GFF2664 0.89 +0.0
349,254 - GFF2664 0.90 +0.9
349,270 - +0.2

Or see this region's nucleotide sequence