Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2618 and GFF2619 are separated by 5 nucleotides GFF2619 and GFF2620 are separated by 387 nucleotides GFF2620 and GFF2621 are separated by 252 nucleotides
GFF2618 - Conjugal transfer protein TraG, at 300,619 to 302,598
GFF2618
GFF2619 - hypothetical protein, at 302,604 to 303,029
GFF2619
GFF2620 - hypothetical protein, at 303,417 to 304,076
GFF2620
GFF2621 - hypothetical protein, at 304,329 to 306,665
GFF2621
Position (kb) 303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 302.529 kb on + strand at 302.529 kb on + strand at 302.530 kb on - strand at 302.530 kb on - strand at 302.530 kb on - strand at 302.530 kb on - strand at 302.530 kb on - strand at 302.530 kb on - strand at 302.640 kb on + strand at 302.641 kb on - strand at 302.641 kb on - strand at 302.641 kb on - strand at 302.676 kb on + strand, within GFF2619 at 302.676 kb on + strand, within GFF2619 at 302.677 kb on - strand, within GFF2619 at 302.677 kb on - strand, within GFF2619 at 302.677 kb on - strand, within GFF2619 at 302.835 kb on + strand, within GFF2619 at 302.860 kb on + strand, within GFF2619 at 302.861 kb on - strand, within GFF2619 at 302.861 kb on - strand, within GFF2619 at 302.937 kb on + strand, within GFF2619 at 302.937 kb on + strand, within GFF2619 at 302.937 kb on + strand, within GFF2619 at 302.937 kb on + strand, within GFF2619 at 302.938 kb on - strand, within GFF2619 at 303.028 kb on - strand at 303.028 kb on - strand at 303.034 kb on + strand at 303.035 kb on - strand at 303.253 kb on + strand at 303.258 kb on + strand at 303.269 kb on + strand at 303.269 kb on + strand at 303.270 kb on - strand at 303.270 kb on - strand at 303.280 kb on + strand at 303.280 kb on + strand at 303.280 kb on + strand at 303.280 kb on + strand at 303.280 kb on + strand at 303.280 kb on + strand at 303.281 kb on - strand at 303.281 kb on - strand at 303.293 kb on + strand at 303.293 kb on + strand at 303.293 kb on + strand at 303.294 kb on - strand at 303.294 kb on - strand at 303.294 kb on - strand at 303.413 kb on + strand at 303.452 kb on + strand at 303.453 kb on - strand at 303.453 kb on - strand at 303.453 kb on - strand at 303.460 kb on - strand at 303.574 kb on + strand, within GFF2620 at 303.574 kb on + strand, within GFF2620 at 303.574 kb on + strand, within GFF2620 at 303.574 kb on + strand, within GFF2620 at 303.575 kb on - strand, within GFF2620 at 303.575 kb on - strand, within GFF2620 at 303.645 kb on + strand, within GFF2620 at 303.646 kb on - strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.672 kb on + strand, within GFF2620 at 303.673 kb on - strand, within GFF2620 at 303.673 kb on - strand, within GFF2620 at 303.730 kb on + strand, within GFF2620 at 303.730 kb on + strand, within GFF2620 at 303.731 kb on - strand, within GFF2620 at 303.787 kb on + strand, within GFF2620 at 303.787 kb on + strand, within GFF2620 at 303.788 kb on - strand, within GFF2620 at 303.820 kb on + strand, within GFF2620 at 303.821 kb on - strand, within GFF2620 at 303.856 kb on + strand, within GFF2620 at 303.878 kb on - strand, within GFF2620 at 303.878 kb on - strand, within GFF2620 at 303.878 kb on - strand, within GFF2620 at 303.997 kb on + strand, within GFF2620 at 303.997 kb on + strand, within GFF2620 at 303.997 kb on + strand, within GFF2620 at 303.998 kb on - strand, within GFF2620 at 304.021 kb on + strand at 304.021 kb on + strand at 304.021 kb on + strand at 304.021 kb on + strand at 304.021 kb on + strand at 304.021 kb on + strand at 304.021 kb on + strand at 304.051 kb on + strand at 304.052 kb on - strand at 304.052 kb on - strand at 304.165 kb on - strand at 304.212 kb on + strand at 304.213 kb on - strand at 304.225 kb on + strand at 304.229 kb on + strand at 304.229 kb on + strand at 304.389 kb on - strand at 304.389 kb on - strand at 304.389 kb on - strand at 304.389 kb on - strand at 304.389 kb on - strand at 304.389 kb on - strand at 304.390 kb on + strand at 304.390 kb on + strand at 304.390 kb on + strand at 304.390 kb on + strand at 304.390 kb on + strand at 304.390 kb on + strand at 304.391 kb on - strand at 304.579 kb on + strand, within GFF2621 at 304.581 kb on + strand, within GFF2621 at 304.581 kb on + strand, within GFF2621 at 304.581 kb on + strand, within GFF2621 at 304.581 kb on + strand, within GFF2621 at 304.582 kb on - strand, within GFF2621 at 304.582 kb on - strand, within GFF2621 at 304.582 kb on - strand, within GFF2621 at 304.595 kb on - strand, within GFF2621 at 304.595 kb on - strand, within GFF2621 at 304.609 kb on + strand, within GFF2621 at 304.609 kb on + strand, within GFF2621 at 304.609 kb on + strand, within GFF2621 at 304.610 kb on - strand, within GFF2621 at 304.610 kb on - strand, within GFF2621 at 304.755 kb on + strand, within GFF2621 at 304.755 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.876 kb on + strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.877 kb on - strand, within GFF2621 at 304.995 kb on + strand, within GFF2621
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 302,529 + +0.7 302,529 + +0.2 302,530 - -1.0 302,530 - +0.4 302,530 - +0.1 302,530 - +1.0 302,530 - -0.4 302,530 - +0.3 302,640 + -1.4 302,641 - +0.9 302,641 - -0.5 302,641 - -0.5 302,676 + GFF2619 0.17 -0.4 302,676 + GFF2619 0.17 -0.1 302,677 - GFF2619 0.17 -0.9 302,677 - GFF2619 0.17 +0.0 302,677 - GFF2619 0.17 -0.6 302,835 + GFF2619 0.54 -1.6 302,860 + GFF2619 0.60 -0.7 302,861 - GFF2619 0.60 -0.8 302,861 - GFF2619 0.60 +0.1 302,937 + GFF2619 0.78 +0.5 302,937 + GFF2619 0.78 -0.5 302,937 + GFF2619 0.78 +1.1 302,937 + GFF2619 0.78 -0.8 302,938 - GFF2619 0.78 -0.6 303,028 - +0.1 303,028 - +0.8 303,034 + +1.1 303,035 - +0.8 303,253 + +0.2 303,258 + -0.6 303,269 + +0.2 303,269 + -0.4 303,270 - -2.5 303,270 - +1.2 303,280 + -1.2 303,280 + -0.4 303,280 + +0.7 303,280 + -0.0 303,280 + -0.1 303,280 + +0.7 303,281 - +1.3 303,281 - +1.5 303,293 + +0.1 303,293 + -1.0 303,293 + +0.6 303,294 - +0.4 303,294 - +0.5 303,294 - -0.8 303,413 + -0.4 303,452 + -1.3 303,453 - -0.4 303,453 - +1.3 303,453 - -1.2 303,460 - -0.4 303,574 + GFF2620 0.24 -2.0 303,574 + GFF2620 0.24 +0.4 303,574 + GFF2620 0.24 +0.6 303,574 + GFF2620 0.24 +0.5 303,575 - GFF2620 0.24 -0.7 303,575 - GFF2620 0.24 -1.4 303,645 + GFF2620 0.35 +1.0 303,646 - GFF2620 0.35 -0.8 303,672 + GFF2620 0.39 +0.6 303,672 + GFF2620 0.39 +0.1 303,672 + GFF2620 0.39 +1.0 303,672 + GFF2620 0.39 +0.5 303,672 + GFF2620 0.39 +0.8 303,672 + GFF2620 0.39 -1.0 303,673 - GFF2620 0.39 -0.2 303,673 - GFF2620 0.39 +1.0 303,730 + GFF2620 0.47 +0.2 303,730 + GFF2620 0.47 +0.1 303,731 - GFF2620 0.48 -0.6 303,787 + GFF2620 0.56 +1.7 303,787 + GFF2620 0.56 -0.5 303,788 - GFF2620 0.56 -0.7 303,820 + GFF2620 0.61 +1.4 303,821 - GFF2620 0.61 -0.1 303,856 + GFF2620 0.67 +0.7 303,878 - GFF2620 0.70 -0.9 303,878 - GFF2620 0.70 -0.9 303,878 - GFF2620 0.70 +0.8 303,997 + GFF2620 0.88 -0.1 303,997 + GFF2620 0.88 -0.1 303,997 + GFF2620 0.88 -0.0 303,998 - GFF2620 0.88 +1.2 304,021 + -0.0 304,021 + +2.6 304,021 + -0.6 304,021 + -0.9 304,021 + -0.6 304,021 + +0.7 304,021 + -0.1 304,051 + +1.4 304,052 - -0.3 304,052 - +0.2 304,165 - +0.3 304,212 + +1.4 304,213 - -1.0 304,225 + +0.2 304,229 + -0.4 304,229 + +0.6 304,389 - -1.2 304,389 - +0.1 304,389 - +0.6 304,389 - -0.6 304,389 - +0.9 304,389 - -0.0 304,390 + -0.4 304,390 + -0.7 304,390 + +0.2 304,390 + +0.3 304,390 + +1.5 304,390 + +0.7 304,391 - -0.5 304,579 + GFF2621 0.11 +0.4 304,581 + GFF2621 0.11 -0.1 304,581 + GFF2621 0.11 -1.3 304,581 + GFF2621 0.11 -0.2 304,581 + GFF2621 0.11 -0.5 304,582 - GFF2621 0.11 -1.1 304,582 - GFF2621 0.11 +0.2 304,582 - GFF2621 0.11 +0.1 304,595 - GFF2621 0.11 +0.7 304,595 - GFF2621 0.11 -0.4 304,609 + GFF2621 0.12 -0.2 304,609 + GFF2621 0.12 -0.4 304,609 + GFF2621 0.12 -2.8 304,610 - GFF2621 0.12 -0.9 304,610 - GFF2621 0.12 -0.1 304,755 + GFF2621 0.18 +0.8 304,755 + GFF2621 0.18 -0.9 304,876 + GFF2621 0.23 -0.3 304,876 + GFF2621 0.23 +1.1 304,876 + GFF2621 0.23 -0.3 304,876 + GFF2621 0.23 -1.1 304,876 + GFF2621 0.23 +0.2 304,876 + GFF2621 0.23 -1.0 304,877 - GFF2621 0.23 -1.1 304,877 - GFF2621 0.23 +0.7 304,877 - GFF2621 0.23 -1.7 304,877 - GFF2621 0.23 +0.1 304,877 - GFF2621 0.23 -0.1 304,877 - GFF2621 0.23 -0.2 304,995 + GFF2621 0.28 -0.5
Or see this region's nucleotide sequence