Strain Fitness in Xanthobacter sp. DMC5 around GFF2598

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2597 and GFF2598 are separated by 146 nucleotidesGFF2598 and GFF2599 overlap by 1 nucleotides GFF2597 - hypothetical protein, at 279,609 to 281,576 GFF2597 GFF2598 - hypothetical protein, at 281,723 to 283,267 GFF2598 GFF2599 - hypothetical protein, at 283,267 to 284,118 GFF2599 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 280.884 kb on - strand, within GFF2597at 280.884 kb on - strand, within GFF2597at 281.007 kb on + strand, within GFF2597at 281.008 kb on - strand, within GFF2597at 281.008 kb on - strand, within GFF2597at 281.008 kb on - strand, within GFF2597at 281.065 kb on - strand, within GFF2597at 281.172 kb on + strand, within GFF2597at 281.172 kb on + strand, within GFF2597at 281.172 kb on + strand, within GFF2597at 281.172 kb on + strand, within GFF2597at 281.173 kb on - strand, within GFF2597at 281.212 kb on - strand, within GFF2597at 281.212 kb on - strand, within GFF2597at 281.212 kb on - strand, within GFF2597at 281.230 kb on + strand, within GFF2597at 281.231 kb on - strand, within GFF2597at 281.289 kb on + strand, within GFF2597at 281.289 kb on + strand, within GFF2597at 281.289 kb on + strand, within GFF2597at 281.289 kb on + strand, within GFF2597at 281.290 kb on - strand, within GFF2597at 281.290 kb on - strand, within GFF2597at 281.290 kb on - strand, within GFF2597at 281.290 kb on - strand, within GFF2597at 281.310 kb on + strand, within GFF2597at 281.310 kb on + strand, within GFF2597at 281.311 kb on - strand, within GFF2597at 281.311 kb on - strand, within GFF2597at 281.311 kb on - strand, within GFF2597at 281.311 kb on - strand, within GFF2597at 281.448 kb on - strandat 281.466 kb on + strandat 281.575 kb on - strandat 281.593 kb on - strandat 281.597 kb on - strandat 281.600 kb on + strandat 281.600 kb on + strandat 281.600 kb on + strandat 281.600 kb on + strandat 281.600 kb on + strandat 281.601 kb on - strandat 281.601 kb on - strandat 281.601 kb on - strandat 281.644 kb on + strandat 281.644 kb on + strandat 281.644 kb on + strandat 281.674 kb on - strandat 281.784 kb on - strandat 281.784 kb on - strandat 281.835 kb on - strandat 281.861 kb on - strandat 281.861 kb on - strandat 281.861 kb on - strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.874 kb on + strandat 281.875 kb on - strandat 281.884 kb on + strand, within GFF2598at 281.884 kb on + strand, within GFF2598at 281.884 kb on + strand, within GFF2598at 281.904 kb on + strand, within GFF2598at 281.904 kb on + strand, within GFF2598at 281.905 kb on - strand, within GFF2598at 281.962 kb on - strand, within GFF2598at 282.008 kb on + strand, within GFF2598at 282.009 kb on - strand, within GFF2598at 282.009 kb on - strand, within GFF2598at 282.009 kb on - strand, within GFF2598at 282.009 kb on - strand, within GFF2598at 282.011 kb on + strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.012 kb on - strand, within GFF2598at 282.022 kb on + strand, within GFF2598at 282.030 kb on + strand, within GFF2598at 282.224 kb on + strand, within GFF2598at 282.224 kb on + strand, within GFF2598at 282.224 kb on + strand, within GFF2598at 282.225 kb on - strand, within GFF2598at 282.225 kb on - strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.244 kb on + strand, within GFF2598at 282.245 kb on - strand, within GFF2598at 282.245 kb on - strand, within GFF2598at 282.245 kb on - strand, within GFF2598at 282.245 kb on - strand, within GFF2598at 282.362 kb on - strand, within GFF2598at 282.375 kb on + strand, within GFF2598at 282.375 kb on + strand, within GFF2598at 282.375 kb on + strand, within GFF2598at 282.375 kb on + strand, within GFF2598at 282.376 kb on - strand, within GFF2598at 282.376 kb on - strand, within GFF2598at 282.376 kb on - strand, within GFF2598at 282.469 kb on + strand, within GFF2598at 282.469 kb on + strand, within GFF2598at 282.494 kb on + strand, within GFF2598at 282.494 kb on + strand, within GFF2598at 282.494 kb on + strand, within GFF2598at 282.494 kb on + strand, within GFF2598at 282.495 kb on - strand, within GFF2598at 282.495 kb on - strand, within GFF2598at 282.495 kb on - strand, within GFF2598at 282.495 kb on - strand, within GFF2598at 282.626 kb on - strand, within GFF2598at 282.652 kb on + strand, within GFF2598at 282.653 kb on - strand, within GFF2598at 282.653 kb on - strand, within GFF2598at 282.653 kb on - strand, within GFF2598at 282.653 kb on - strand, within GFF2598at 282.702 kb on + strand, within GFF2598at 282.702 kb on + strand, within GFF2598at 282.702 kb on + strand, within GFF2598at 282.702 kb on + strand, within GFF2598at 282.703 kb on - strand, within GFF2598at 282.703 kb on - strand, within GFF2598at 282.703 kb on - strand, within GFF2598at 282.703 kb on - strand, within GFF2598at 282.703 kb on - strand, within GFF2598at 282.858 kb on + strand, within GFF2598at 282.858 kb on + strand, within GFF2598at 282.859 kb on - strand, within GFF2598at 282.888 kb on + strand, within GFF2598at 282.903 kb on + strand, within GFF2598at 282.903 kb on + strand, within GFF2598at 282.904 kb on - strand, within GFF2598at 282.996 kb on + strand, within GFF2598at 282.996 kb on + strand, within GFF2598at 282.997 kb on - strand, within GFF2598at 283.175 kb on + strandat 283.175 kb on + strandat 283.176 kb on - strandat 283.176 kb on - strandat 283.176 kb on - strandat 283.176 kb on - strandat 283.176 kb on - strandat 283.193 kb on + strandat 283.193 kb on + strandat 283.194 kb on - strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.277 kb on + strandat 283.278 kb on - strandat 283.278 kb on - strandat 283.278 kb on - strandat 283.278 kb on - strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.322 kb on + strandat 283.323 kb on - strandat 283.323 kb on - strandat 283.323 kb on - strandat 283.323 kb on - strandat 283.346 kb on + strandat 283.347 kb on - strandat 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.399 kb on + strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.400 kb on - strand, within GFF2599at 283.429 kb on + strand, within GFF2599at 283.429 kb on + strand, within GFF2599at 283.430 kb on - strand, within GFF2599at 283.430 kb on - strand, within GFF2599at 283.430 kb on - strand, within GFF2599at 283.492 kb on + strand, within GFF2599at 283.493 kb on - strand, within GFF2599at 283.534 kb on + strand, within GFF2599at 283.534 kb on + strand, within GFF2599at 283.534 kb on + strand, within GFF2599at 283.534 kb on + strand, within GFF2599at 283.535 kb on - strand, within GFF2599at 283.535 kb on - strand, within GFF2599at 283.535 kb on - strand, within GFF2599at 283.535 kb on - strand, within GFF2599at 283.592 kb on - strand, within GFF2599at 283.655 kb on + strand, within GFF2599at 283.655 kb on + strand, within GFF2599at 283.656 kb on - strand, within GFF2599at 283.656 kb on - strand, within GFF2599at 283.741 kb on + strand, within GFF2599at 283.742 kb on - strand, within GFF2599at 283.742 kb on - strand, within GFF2599at 283.791 kb on + strand, within GFF2599at 283.791 kb on + strand, within GFF2599at 283.791 kb on + strand, within GFF2599at 283.792 kb on - strand, within GFF2599at 283.809 kb on - strand, within GFF2599at 283.816 kb on + strand, within GFF2599at 283.816 kb on + strand, within GFF2599at 283.882 kb on + strand, within GFF2599at 283.883 kb on - strand, within GFF2599at 283.883 kb on - strand, within GFF2599at 283.883 kb on - strand, within GFF2599at 283.883 kb on - strand, within GFF2599at 283.883 kb on - strand, within GFF2599at 283.900 kb on + strand, within GFF2599at 283.900 kb on + strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.939 kb on + strand, within GFF2599at 283.939 kb on + strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 284.010 kb on + strand, within GFF2599at 284.011 kb on - strand, within GFF2599at 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.063 kb on + strandat 284.063 kb on + strandat 284.064 kb on - strandat 284.139 kb on + strandat 284.157 kb on + strandat 284.157 kb on + strandat 284.222 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.252 kb on - strandat 284.252 kb on - strandat 284.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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280,884 - GFF2597 0.65 +0.6
280,884 - GFF2597 0.65 +0.4
281,007 + GFF2597 0.71 +0.1
281,008 - GFF2597 0.71 +0.1
281,008 - GFF2597 0.71 -1.2
281,008 - GFF2597 0.71 +0.2
281,065 - GFF2597 0.74 -1.1
281,172 + GFF2597 0.79 -0.1
281,172 + GFF2597 0.79 -0.2
281,172 + GFF2597 0.79 +0.1
281,172 + GFF2597 0.79 -0.3
281,173 - GFF2597 0.79 +0.8
281,212 - GFF2597 0.81 +1.3
281,212 - GFF2597 0.81 -1.1
281,212 - GFF2597 0.81 +1.2
281,230 + GFF2597 0.82 -0.1
281,231 - GFF2597 0.82 -0.6
281,289 + GFF2597 0.85 +0.1
281,289 + GFF2597 0.85 -0.1
281,289 + GFF2597 0.85 +0.2
281,289 + GFF2597 0.85 -0.4
281,290 - GFF2597 0.85 +0.1
281,290 - GFF2597 0.85 -0.0
281,290 - GFF2597 0.85 +0.2
281,290 - GFF2597 0.85 -0.2
281,310 + GFF2597 0.86 -0.6
281,310 + GFF2597 0.86 +0.2
281,311 - GFF2597 0.86 -0.5
281,311 - GFF2597 0.86 +0.8
281,311 - GFF2597 0.86 +0.4
281,311 - GFF2597 0.86 +0.3
281,448 - -1.4
281,466 + +0.7
281,575 - +1.6
281,593 - +0.0
281,597 - +1.4
281,600 + -1.2
281,600 + +0.4
281,600 + +0.4
281,600 + +1.0
281,600 + +0.4
281,601 - +0.5
281,601 - -0.2
281,601 - +0.3
281,644 + +0.1
281,644 + -0.6
281,644 + +0.2
281,674 - -0.2
281,784 - -0.0
281,784 - -1.0
281,835 - -0.1
281,861 - +0.6
281,861 - +0.8
281,861 - -0.1
281,874 + -3.2
281,874 + -0.8
281,874 + -1.0
281,874 + -0.5
281,874 + +0.9
281,874 + +1.4
281,874 + -0.2
281,874 + -0.3
281,875 - +2.3
281,884 + GFF2598 0.10 +0.6
281,884 + GFF2598 0.10 -0.4
281,884 + GFF2598 0.10 -0.0
281,904 + GFF2598 0.12 +0.6
281,904 + GFF2598 0.12 +0.5
281,905 - GFF2598 0.12 +0.3
281,962 - GFF2598 0.15 -0.3
282,008 + GFF2598 0.18 -0.6
282,009 - GFF2598 0.19 +1.6
282,009 - GFF2598 0.19 -0.7
282,009 - GFF2598 0.19 -0.2
282,009 - GFF2598 0.19 +0.0
282,011 + GFF2598 0.19 +1.5
282,012 - GFF2598 0.19 +0.6
282,012 - GFF2598 0.19 -0.1
282,012 - GFF2598 0.19 -1.7
282,012 - GFF2598 0.19 -1.7
282,012 - GFF2598 0.19 +0.1
282,012 - GFF2598 0.19 +0.4
282,012 - GFF2598 0.19 -1.2
282,022 + GFF2598 0.19 -0.4
282,030 + GFF2598 0.20 +0.2
282,224 + GFF2598 0.32 -0.8
282,224 + GFF2598 0.32 -0.5
282,224 + GFF2598 0.32 +0.8
282,225 - GFF2598 0.32 +0.5
282,225 - GFF2598 0.32 +0.5
282,244 + GFF2598 0.34 +0.9
282,244 + GFF2598 0.34 -0.1
282,244 + GFF2598 0.34 -1.3
282,244 + GFF2598 0.34 -0.3
282,244 + GFF2598 0.34 -0.0
282,244 + GFF2598 0.34 -1.0
282,244 + GFF2598 0.34 +0.4
282,244 + GFF2598 0.34 +0.4
282,244 + GFF2598 0.34 -0.4
282,244 + GFF2598 0.34 +0.4
282,245 - GFF2598 0.34 +0.1
282,245 - GFF2598 0.34 +0.0
282,245 - GFF2598 0.34 -0.3
282,245 - GFF2598 0.34 -0.1
282,362 - GFF2598 0.41 +0.2
282,375 + GFF2598 0.42 +0.3
282,375 + GFF2598 0.42 -0.6
282,375 + GFF2598 0.42 -0.9
282,375 + GFF2598 0.42 +1.2
282,376 - GFF2598 0.42 -1.1
282,376 - GFF2598 0.42 -0.9
282,376 - GFF2598 0.42 -0.1
282,469 + GFF2598 0.48 +0.9
282,469 + GFF2598 0.48 -1.0
282,494 + GFF2598 0.50 +0.8
282,494 + GFF2598 0.50 +0.4
282,494 + GFF2598 0.50 -0.4
282,494 + GFF2598 0.50 -0.8
282,495 - GFF2598 0.50 +0.0
282,495 - GFF2598 0.50 -0.3
282,495 - GFF2598 0.50 +0.4
282,495 - GFF2598 0.50 +0.8
282,626 - GFF2598 0.58 +0.1
282,652 + GFF2598 0.60 +2.0
282,653 - GFF2598 0.60 +0.6
282,653 - GFF2598 0.60 -1.0
282,653 - GFF2598 0.60 +1.6
282,653 - GFF2598 0.60 -0.4
282,702 + GFF2598 0.63 +0.7
282,702 + GFF2598 0.63 +2.5
282,702 + GFF2598 0.63 -0.4
282,702 + GFF2598 0.63 +0.6
282,703 - GFF2598 0.63 +0.5
282,703 - GFF2598 0.63 +0.7
282,703 - GFF2598 0.63 -0.8
282,703 - GFF2598 0.63 -0.6
282,703 - GFF2598 0.63 -1.4
282,858 + GFF2598 0.73 +0.4
282,858 + GFF2598 0.73 -0.6
282,859 - GFF2598 0.74 +0.6
282,888 + GFF2598 0.75 +0.1
282,903 + GFF2598 0.76 +0.5
282,903 + GFF2598 0.76 -0.5
282,904 - GFF2598 0.76 +1.3
282,996 + GFF2598 0.82 +0.1
282,996 + GFF2598 0.82 +0.0
282,997 - GFF2598 0.82 +0.4
283,175 + +0.1
283,175 + -0.2
283,176 - +0.8
283,176 - -0.3
283,176 - -0.3
283,176 - +1.0
283,176 - +0.2
283,193 + -0.6
283,193 + -0.1
283,194 - -0.5
283,277 + +1.0
283,277 + +0.2
283,277 + +0.8
283,277 + +0.4
283,277 + -1.7
283,277 + +0.7
283,277 + +0.8
283,278 - -0.7
283,278 - -0.3
283,278 - -0.9
283,278 - -0.2
283,322 + +0.1
283,322 + +1.0
283,322 + +0.2
283,322 + -0.5
283,322 + +0.5
283,322 + +1.2
283,322 + -0.6
283,322 + +0.2
283,323 - -0.7
283,323 - -0.3
283,323 - -0.9
283,323 - +1.0
283,346 + +0.6
283,347 - +0.8
283,399 + GFF2599 0.15 -0.2
283,399 + GFF2599 0.15 -0.6
283,399 + GFF2599 0.15 +0.2
283,399 + GFF2599 0.15 -0.3
283,399 + GFF2599 0.15 +0.2
283,399 + GFF2599 0.15 -1.4
283,399 + GFF2599 0.15 -0.4
283,399 + GFF2599 0.15 +0.2
283,399 + GFF2599 0.15 +0.0
283,399 + GFF2599 0.15 -1.6
283,400 - GFF2599 0.16 +0.3
283,400 - GFF2599 0.16 +0.8
283,400 - GFF2599 0.16 +1.0
283,400 - GFF2599 0.16 -1.4
283,400 - GFF2599 0.16 -0.8
283,400 - GFF2599 0.16 -1.3
283,400 - GFF2599 0.16 -0.3
283,429 + GFF2599 0.19 +0.0
283,429 + GFF2599 0.19 +0.2
283,430 - GFF2599 0.19 +0.8
283,430 - GFF2599 0.19 +0.3
283,430 - GFF2599 0.19 +0.2
283,492 + GFF2599 0.26 +0.2
283,493 - GFF2599 0.27 -0.9
283,534 + GFF2599 0.31 +0.6
283,534 + GFF2599 0.31 +0.3
283,534 + GFF2599 0.31 +0.4
283,534 + GFF2599 0.31 -0.5
283,535 - GFF2599 0.31 -0.4
283,535 - GFF2599 0.31 +1.9
283,535 - GFF2599 0.31 +0.9
283,535 - GFF2599 0.31 +0.4
283,592 - GFF2599 0.38 -0.8
283,655 + GFF2599 0.46 -0.2
283,655 + GFF2599 0.46 -1.2
283,656 - GFF2599 0.46 +0.6
283,656 - GFF2599 0.46 +1.0
283,741 + GFF2599 0.56 -0.8
283,742 - GFF2599 0.56 +1.4
283,742 - GFF2599 0.56 -0.4
283,791 + GFF2599 0.62 +0.3
283,791 + GFF2599 0.62 -0.3
283,791 + GFF2599 0.62 +0.4
283,792 - GFF2599 0.62 +0.0
283,809 - GFF2599 0.64 +0.6
283,816 + GFF2599 0.64 +0.7
283,816 + GFF2599 0.64 +0.2
283,882 + GFF2599 0.72 -0.4
283,883 - GFF2599 0.72 -2.5
283,883 - GFF2599 0.72 -0.1
283,883 - GFF2599 0.72 -0.2
283,883 - GFF2599 0.72 -1.0
283,883 - GFF2599 0.72 -0.4
283,900 + GFF2599 0.74 -1.2
283,900 + GFF2599 0.74 +0.0
283,901 - GFF2599 0.74 +0.7
283,901 - GFF2599 0.74 +0.6
283,901 - GFF2599 0.74 -0.8
283,935 + GFF2599 0.78 -0.5
283,935 + GFF2599 0.78 -1.3
283,935 + GFF2599 0.78 +0.2
283,936 - GFF2599 0.79 +0.9
283,936 - GFF2599 0.79 +1.0
283,936 - GFF2599 0.79 +0.0
283,939 + GFF2599 0.79 -0.7
283,939 + GFF2599 0.79 -0.6
283,940 - GFF2599 0.79 +0.2
283,940 - GFF2599 0.79 -0.9
283,940 - GFF2599 0.79 +0.4
284,010 + GFF2599 0.87 -0.1
284,011 - GFF2599 0.87 +1.1
284,054 - -0.1
284,054 - -0.7
284,054 - +0.3
284,054 - -1.5
284,054 - -0.0
284,054 - -0.1
284,054 - +0.5
284,063 + -1.0
284,063 + +0.8
284,064 - -0.2
284,139 + +0.4
284,157 + -0.4
284,157 + +0.6
284,222 + -0.6
284,251 + -0.3
284,251 + -0.7
284,251 + -0.1
284,251 + +1.0
284,252 - -0.6
284,252 - +0.2
284,252 - -2.1

Or see this region's nucleotide sequence