Strain Fitness in Xanthobacter sp. DMC5 around GFF2592

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2591 and GFF2592 are separated by 2 nucleotidesGFF2592 and GFF2593 are separated by 92 nucleotidesGFF2593 and GFF2594 are separated by 56 nucleotides GFF2591 - hypothetical protein, at 273,575 to 274,612 GFF2591 GFF2592 - High-affinity branched-chain amino acid transport system permease protein LivH, at 274,615 to 275,514 GFF2592 GFF2593 - hypothetical protein, at 275,607 to 275,987 GFF2593 GFF2594 - HTH-type transcriptional repressor NanR, at 276,044 to 276,862 GFF2594 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 273.723 kb on + strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.052 kb on + strand, within GFF2591at 274.055 kb on + strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.100 kb on + strand, within GFF2591at 274.100 kb on + strand, within GFF2591at 274.101 kb on - strand, within GFF2591at 274.101 kb on - strand, within GFF2591at 274.248 kb on + strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.261 kb on - strand, within GFF2591at 274.261 kb on - strand, within GFF2591at 274.359 kb on + strand, within GFF2591at 274.360 kb on - strand, within GFF2591at 274.397 kb on - strand, within GFF2591at 274.397 kb on - strand, within GFF2591at 274.428 kb on + strand, within GFF2591at 274.428 kb on + strand, within GFF2591at 274.428 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.482 kb on + strand, within GFF2591at 274.482 kb on + strand, within GFF2591at 274.483 kb on - strand, within GFF2591at 274.483 kb on - strand, within GFF2591at 274.739 kb on + strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.221 kb on - strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.254 kb on + strand, within GFF2592at 275.255 kb on - strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.471 kb on - strandat 275.471 kb on - strandat 275.474 kb on + strandat 275.475 kb on - strandat 275.525 kb on + strandat 275.526 kb on - strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.665 kb on + strand, within GFF2593at 275.665 kb on + strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.858 kb on - strand, within GFF2593at 275.938 kb on + strand, within GFF2593at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.258 kb on + strand, within GFF2594at 276.259 kb on - strand, within GFF2594at 276.288 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.445 kb on + strand, within GFF2594at 276.446 kb on - strand, within GFF2594

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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273,723 + GFF2591 0.14 +0.1
273,724 - GFF2591 0.14 -0.4
273,724 - GFF2591 0.14 -0.4
273,724 - GFF2591 0.14 -1.7
273,724 - GFF2591 0.14 +0.1
273,951 + GFF2591 0.36 -1.0
273,951 + GFF2591 0.36 -0.7
273,951 + GFF2591 0.36 +0.2
274,008 + GFF2591 0.42 -0.2
274,008 + GFF2591 0.42 -1.4
274,008 + GFF2591 0.42 -0.2
274,008 + GFF2591 0.42 -2.7
274,008 + GFF2591 0.42 +0.9
274,008 + GFF2591 0.42 -1.6
274,009 - GFF2591 0.42 +1.0
274,009 - GFF2591 0.42 -0.2
274,009 - GFF2591 0.42 -0.4
274,009 - GFF2591 0.42 +1.8
274,009 - GFF2591 0.42 -1.5
274,052 + GFF2591 0.46 +0.3
274,055 + GFF2591 0.46 -0.4
274,072 - GFF2591 0.48 +0.2
274,072 - GFF2591 0.48 +1.3
274,072 - GFF2591 0.48 -0.6
274,072 - GFF2591 0.48 -2.0
274,100 + GFF2591 0.51 -1.2
274,100 + GFF2591 0.51 +0.2
274,101 - GFF2591 0.51 +0.0
274,101 - GFF2591 0.51 -1.0
274,248 + GFF2591 0.65 +0.8
274,249 - GFF2591 0.65 -0.1
274,249 - GFF2591 0.65 +0.0
274,249 - GFF2591 0.65 -0.2
274,249 - GFF2591 0.65 +0.1
274,260 + GFF2591 0.66 -0.3
274,260 + GFF2591 0.66 -0.3
274,260 + GFF2591 0.66 +0.3
274,261 - GFF2591 0.66 +0.2
274,261 - GFF2591 0.66 -0.4
274,359 + GFF2591 0.76 -0.1
274,360 - GFF2591 0.76 -0.3
274,397 - GFF2591 0.79 -1.3
274,397 - GFF2591 0.79 -1.2
274,428 + GFF2591 0.82 -0.4
274,428 + GFF2591 0.82 -0.2
274,428 - GFF2591 0.82 +0.3
274,429 - GFF2591 0.82 -0.3
274,429 - GFF2591 0.82 -0.3
274,429 - GFF2591 0.82 -0.5
274,482 + GFF2591 0.87 +0.0
274,482 + GFF2591 0.87 -0.6
274,483 - GFF2591 0.87 +0.4
274,483 - GFF2591 0.87 -0.4
274,739 + GFF2592 0.14 +0.3
274,740 - GFF2592 0.14 +1.0
274,740 - GFF2592 0.14 +1.0
274,740 - GFF2592 0.14 +0.8
274,740 - GFF2592 0.14 -0.3
274,844 + GFF2592 0.25 +0.2
274,844 + GFF2592 0.25 -0.6
274,845 - GFF2592 0.26 +0.8
274,845 - GFF2592 0.26 +1.2
275,002 + GFF2592 0.43 -0.2
275,002 + GFF2592 0.43 +0.6
275,002 + GFF2592 0.43 -0.4
275,002 + GFF2592 0.43 +0.1
275,003 - GFF2592 0.43 +0.9
275,003 - GFF2592 0.43 -0.4
275,003 - GFF2592 0.43 -1.0
275,003 - GFF2592 0.43 -0.4
275,088 - GFF2592 0.53 +0.7
275,088 - GFF2592 0.53 -0.6
275,088 - GFF2592 0.53 -1.8
275,096 + GFF2592 0.53 -1.1
275,096 + GFF2592 0.53 -0.3
275,220 + GFF2592 0.67 -0.3
275,220 + GFF2592 0.67 -0.1
275,221 - GFF2592 0.67 +0.0
275,237 + GFF2592 0.69 +0.9
275,237 + GFF2592 0.69 +0.2
275,238 - GFF2592 0.69 +0.0
275,238 - GFF2592 0.69 -0.2
275,238 - GFF2592 0.69 -0.5
275,238 - GFF2592 0.69 -2.7
275,238 - GFF2592 0.69 +0.1
275,254 + GFF2592 0.71 -0.4
275,255 - GFF2592 0.71 -1.6
275,372 + GFF2592 0.84 -0.5
275,372 + GFF2592 0.84 +0.8
275,373 - GFF2592 0.84 +1.0
275,373 - GFF2592 0.84 +0.7
275,373 - GFF2592 0.84 +0.2
275,373 - GFF2592 0.84 +0.4
275,471 - +0.5
275,471 - +0.1
275,474 + +0.2
275,475 - -0.6
275,525 + +0.0
275,526 - -1.9
275,627 + +0.9
275,627 + -0.3
275,627 + +0.5
275,627 + -1.6
275,627 + -0.6
275,628 - -0.6
275,628 - -0.1
275,628 - +0.4
275,665 + GFF2593 0.15 -0.7
275,665 + GFF2593 0.15 -0.3
275,666 - GFF2593 0.15 -0.1
275,666 - GFF2593 0.15 -0.3
275,666 - GFF2593 0.15 +0.5
275,666 - GFF2593 0.15 -0.4
275,666 - GFF2593 0.15 +0.0
275,666 - GFF2593 0.15 -0.2
275,666 - GFF2593 0.15 +0.4
275,666 - GFF2593 0.15 +1.4
275,849 + GFF2593 0.64 -0.6
275,849 + GFF2593 0.64 -1.1
275,850 - GFF2593 0.64 +0.4
275,850 - GFF2593 0.64 -0.1
275,850 - GFF2593 0.64 +0.0
275,850 - GFF2593 0.64 +0.0
275,850 - GFF2593 0.64 -1.1
275,850 - GFF2593 0.64 -0.3
275,858 - GFF2593 0.66 -1.0
275,938 + GFF2593 0.87 +0.6
276,157 + GFF2594 0.14 -3.2
276,157 + GFF2594 0.14 -0.2
276,157 + GFF2594 0.14 +0.1
276,157 + GFF2594 0.14 +0.4
276,158 - GFF2594 0.14 +1.3
276,158 - GFF2594 0.14 -0.9
276,158 - GFF2594 0.14 -0.1
276,158 - GFF2594 0.14 -1.1
276,158 - GFF2594 0.14 +0.7
276,258 + GFF2594 0.26 +0.8
276,259 - GFF2594 0.26 -0.4
276,288 + GFF2594 0.30 +0.2
276,293 + GFF2594 0.30 +0.8
276,293 + GFF2594 0.30 -1.0
276,445 + GFF2594 0.49 +0.1
276,446 - GFF2594 0.49 -0.0

Or see this region's nucleotide sequence