Strain Fitness in Xanthobacter sp. DMC5 around GFF2558

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2557 and GFF2558 are separated by 58 nucleotidesGFF2558 and GFF2559 are separated by 15 nucleotides GFF2557 - Solute-binding protein, at 230,776 to 231,795 GFF2557 GFF2558 - hypothetical protein, at 231,854 to 232,429 GFF2558 GFF2559 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 232,445 to 233,725 GFF2559 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.930 kb on - strand, within GFF2557at 230.953 kb on + strand, within GFF2557at 230.954 kb on - strand, within GFF2557at 230.954 kb on - strand, within GFF2557at 230.992 kb on + strand, within GFF2557at 230.993 kb on - strand, within GFF2557at 231.088 kb on - strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.269 kb on - strand, within GFF2557at 231.403 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.449 kb on - strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.475 kb on + strand, within GFF2557at 231.476 kb on - strand, within GFF2557at 231.490 kb on + strand, within GFF2557at 231.490 kb on + strand, within GFF2557at 231.491 kb on - strand, within GFF2557at 231.730 kb on + strandat 231.730 kb on + strandat 231.731 kb on - strandat 231.731 kb on - strandat 231.875 kb on - strandat 232.025 kb on + strand, within GFF2558at 232.025 kb on + strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.026 kb on - strand, within GFF2558at 232.046 kb on - strand, within GFF2558at 232.196 kb on + strand, within GFF2558at 232.236 kb on - strand, within GFF2558at 232.236 kb on - strand, within GFF2558at 232.236 kb on - strand, within GFF2558at 232.262 kb on + strand, within GFF2558at 232.544 kb on + strandat 232.544 kb on + strandat 232.545 kb on - strandat 232.626 kb on - strand, within GFF2559at 232.832 kb on + strand, within GFF2559at 232.832 kb on + strand, within GFF2559at 232.832 kb on + strand, within GFF2559at 232.844 kb on + strand, within GFF2559at 232.844 kb on + strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.136 kb on + strand, within GFF2559at 233.136 kb on + strand, within GFF2559at 233.137 kb on - strand, within GFF2559at 233.137 kb on - strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.401 kb on + strand, within GFF2559at 233.401 kb on + strand, within GFF2559at 233.402 kb on - strand, within GFF2559at 233.404 kb on - strand, within GFF2559

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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230,930 - GFF2557 0.15 -0.8
230,953 + GFF2557 0.17 +0.2
230,954 - GFF2557 0.17 -1.6
230,954 - GFF2557 0.17 -0.6
230,992 + GFF2557 0.21 +0.7
230,993 - GFF2557 0.21 -0.0
231,088 - GFF2557 0.31 -0.4
231,166 + GFF2557 0.38 -0.4
231,166 + GFF2557 0.38 -0.6
231,166 + GFF2557 0.38 +0.2
231,166 + GFF2557 0.38 +0.2
231,166 + GFF2557 0.38 -0.8
231,166 + GFF2557 0.38 +0.4
231,166 + GFF2557 0.38 +0.2
231,167 - GFF2557 0.38 +0.2
231,167 - GFF2557 0.38 -0.9
231,167 - GFF2557 0.38 +1.4
231,167 - GFF2557 0.38 +0.1
231,167 - GFF2557 0.38 -0.3
231,167 - GFF2557 0.38 -0.1
231,167 - GFF2557 0.38 -0.7
231,167 - GFF2557 0.38 -1.3
231,167 - GFF2557 0.38 +1.0
231,167 - GFF2557 0.38 -0.5
231,167 - GFF2557 0.38 +0.7
231,167 - GFF2557 0.38 -0.7
231,269 - GFF2557 0.48 -1.9
231,403 + GFF2557 0.61 -0.8
231,448 + GFF2557 0.66 -0.4
231,448 + GFF2557 0.66 +0.1
231,448 + GFF2557 0.66 +0.3
231,448 + GFF2557 0.66 -0.3
231,449 - GFF2557 0.66 -0.1
231,457 + GFF2557 0.67 -0.3
231,457 + GFF2557 0.67 +0.1
231,457 + GFF2557 0.67 -0.7
231,475 + GFF2557 0.69 -0.1
231,476 - GFF2557 0.69 +1.2
231,490 + GFF2557 0.70 +0.0
231,490 + GFF2557 0.70 -0.1
231,491 - GFF2557 0.70 -0.4
231,730 + -2.3
231,730 + +1.8
231,731 - +0.3
231,731 - -0.5
231,875 - +0.2
232,025 + GFF2558 0.30 +0.6
232,025 + GFF2558 0.30 -0.9
232,026 - GFF2558 0.30 +0.3
232,026 - GFF2558 0.30 +0.4
232,026 - GFF2558 0.30 +0.0
232,026 - GFF2558 0.30 +0.8
232,026 - GFF2558 0.30 +0.5
232,026 - GFF2558 0.30 -1.5
232,046 - GFF2558 0.33 -0.3
232,196 + GFF2558 0.59 +1.0
232,236 - GFF2558 0.66 -0.9
232,236 - GFF2558 0.66 -0.2
232,236 - GFF2558 0.66 -1.4
232,262 + GFF2558 0.71 -0.8
232,544 + -1.0
232,544 + +0.1
232,545 - +0.1
232,626 - GFF2559 0.14 -1.0
232,832 + GFF2559 0.30 -0.1
232,832 + GFF2559 0.30 -0.6
232,832 + GFF2559 0.30 +0.0
232,844 + GFF2559 0.31 +0.3
232,844 + GFF2559 0.31 -1.0
232,845 - GFF2559 0.31 -1.6
232,845 - GFF2559 0.31 -1.4
232,845 - GFF2559 0.31 -1.3
232,845 - GFF2559 0.31 +1.2
232,845 - GFF2559 0.31 +0.2
232,845 - GFF2559 0.31 +0.4
232,916 + GFF2559 0.37 +0.4
232,916 + GFF2559 0.37 +0.8
232,916 + GFF2559 0.37 -1.6
232,916 + GFF2559 0.37 +0.8
232,916 + GFF2559 0.37 +0.4
232,916 + GFF2559 0.37 -0.4
232,916 + GFF2559 0.37 -0.2
232,916 + GFF2559 0.37 +0.6
232,916 + GFF2559 0.37 -0.4
232,917 - GFF2559 0.37 -1.3
232,917 - GFF2559 0.37 -1.2
232,917 - GFF2559 0.37 -0.1
232,917 - GFF2559 0.37 -0.6
232,917 - GFF2559 0.37 +0.1
233,015 + GFF2559 0.44 +2.4
233,015 + GFF2559 0.44 -0.3
233,015 + GFF2559 0.44 -1.7
233,016 - GFF2559 0.45 +1.3
233,016 - GFF2559 0.45 +0.6
233,016 - GFF2559 0.45 +0.5
233,016 - GFF2559 0.45 -0.8
233,016 - GFF2559 0.45 -0.6
233,136 + GFF2559 0.54 -0.2
233,136 + GFF2559 0.54 -1.0
233,137 - GFF2559 0.54 -0.2
233,137 - GFF2559 0.54 +0.4
233,186 + GFF2559 0.58 -0.7
233,186 + GFF2559 0.58 -0.1
233,186 + GFF2559 0.58 -0.6
233,186 + GFF2559 0.58 -1.1
233,186 + GFF2559 0.58 -1.4
233,187 - GFF2559 0.58 -1.1
233,187 - GFF2559 0.58 +0.1
233,187 - GFF2559 0.58 +0.8
233,187 - GFF2559 0.58 -1.5
233,187 - GFF2559 0.58 -0.2
233,384 + GFF2559 0.73 +0.4
233,384 + GFF2559 0.73 +0.8
233,384 + GFF2559 0.73 -0.5
233,401 + GFF2559 0.75 +0.6
233,401 + GFF2559 0.75 +0.8
233,402 - GFF2559 0.75 +1.0
233,404 - GFF2559 0.75 +0.7

Or see this region's nucleotide sequence