Strain Fitness in Xanthobacter sp. DMC5 around GFF2556

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2554 and GFF2555 are separated by 5 nucleotidesGFF2555 and GFF2556 are separated by 129 nucleotidesGFF2556 and GFF2557 are separated by 80 nucleotides GFF2554 - Uronate isomerase, at 226,845 to 228,257 GFF2554 GFF2555 - HTH-type transcriptional repressor RspR, at 228,263 to 229,033 GFF2555 GFF2556 - Galactarate dehydratase (L-threo-forming), at 229,163 to 230,695 GFF2556 GFF2557 - Solute-binding protein, at 230,776 to 231,795 GFF2557 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1at 228.185 kb on - strandat 228.310 kb on - strandat 228.761 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.790 kb on - strand, within GFF2555at 228.790 kb on - strand, within GFF2555at 228.867 kb on + strand, within GFF2555at 228.867 kb on + strand, within GFF2555at 229.141 kb on + strandat 229.141 kb on + strandat 229.439 kb on + strand, within GFF2556at 229.440 kb on - strand, within GFF2556at 229.440 kb on - strand, within GFF2556at 229.440 kb on - strand, within GFF2556at 229.545 kb on - strand, within GFF2556at 229.545 kb on - strand, within GFF2556at 229.706 kb on + strand, within GFF2556at 229.706 kb on + strand, within GFF2556at 229.707 kb on - strand, within GFF2556at 229.707 kb on - strand, within GFF2556at 229.707 kb on - strand, within GFF2556at 229.707 kb on - strand, within GFF2556at 229.707 kb on - strand, within GFF2556at 229.737 kb on - strand, within GFF2556at 229.737 kb on - strand, within GFF2556at 229.737 kb on - strand, within GFF2556at 229.737 kb on - strand, within GFF2556at 229.737 kb on - strand, within GFF2556at 229.820 kb on + strand, within GFF2556at 229.820 kb on + strand, within GFF2556at 229.821 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.903 kb on - strand, within GFF2556at 229.906 kb on + strand, within GFF2556at 230.103 kb on - strand, within GFF2556at 230.103 kb on - strand, within GFF2556at 230.189 kb on + strand, within GFF2556at 230.189 kb on + strand, within GFF2556at 230.190 kb on - strand, within GFF2556at 230.321 kb on + strand, within GFF2556at 230.321 kb on + strand, within GFF2556at 230.321 kb on + strand, within GFF2556at 230.322 kb on - strand, within GFF2556at 230.322 kb on - strand, within GFF2556at 230.322 kb on - strand, within GFF2556at 230.327 kb on + strand, within GFF2556at 230.327 kb on + strand, within GFF2556at 230.327 kb on + strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.328 kb on - strand, within GFF2556at 230.368 kb on + strand, within GFF2556at 230.369 kb on - strand, within GFF2556at 230.378 kb on + strand, within GFF2556at 230.378 kb on + strand, within GFF2556at 230.379 kb on - strand, within GFF2556at 230.505 kb on + strand, within GFF2556at 230.507 kb on + strand, within GFF2556at 230.507 kb on + strand, within GFF2556at 230.507 kb on + strand, within GFF2556at 230.507 kb on + strand, within GFF2556at 230.508 kb on - strand, within GFF2556at 230.508 kb on - strand, within GFF2556at 230.508 kb on - strand, within GFF2556at 230.536 kb on + strand, within GFF2556at 230.536 kb on + strand, within GFF2556at 230.536 kb on + strand, within GFF2556at 230.737 kb on + strandat 230.738 kb on - strandat 230.738 kb on - strandat 230.817 kb on + strandat 230.930 kb on - strand, within GFF2557at 230.953 kb on + strand, within GFF2557at 230.954 kb on - strand, within GFF2557at 230.954 kb on - strand, within GFF2557at 230.992 kb on + strand, within GFF2557at 230.993 kb on - strand, within GFF2557at 231.088 kb on - strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.166 kb on + strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.167 kb on - strand, within GFF2557at 231.269 kb on - strand, within GFF2557at 231.403 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.448 kb on + strand, within GFF2557at 231.449 kb on - strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.457 kb on + strand, within GFF2557at 231.475 kb on + strand, within GFF2557at 231.476 kb on - strand, within GFF2557at 231.490 kb on + strand, within GFF2557at 231.490 kb on + strand, within GFF2557at 231.491 kb on - strand, within GFF2557

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
228,185 - +0.1
228,310 - -1.6
228,761 + GFF2555 0.65 -1.0
228,789 + GFF2555 0.68 +1.7
228,789 + GFF2555 0.68 +0.2
228,789 + GFF2555 0.68 -1.0
228,789 + GFF2555 0.68 +1.5
228,790 - GFF2555 0.68 -0.1
228,790 - GFF2555 0.68 -0.2
228,867 + GFF2555 0.78 -0.4
228,867 + GFF2555 0.78 -0.1
229,141 + +0.4
229,141 + -0.1
229,439 + GFF2556 0.18 +0.2
229,440 - GFF2556 0.18 -0.6
229,440 - GFF2556 0.18 +0.6
229,440 - GFF2556 0.18 +0.6
229,545 - GFF2556 0.25 +0.7
229,545 - GFF2556 0.25 +0.3
229,706 + GFF2556 0.35 -1.2
229,706 + GFF2556 0.35 -0.9
229,707 - GFF2556 0.35 +0.3
229,707 - GFF2556 0.35 +0.0
229,707 - GFF2556 0.35 -1.0
229,707 - GFF2556 0.35 -1.1
229,707 - GFF2556 0.35 +0.4
229,737 - GFF2556 0.37 +0.0
229,737 - GFF2556 0.37 -0.3
229,737 - GFF2556 0.37 +0.2
229,737 - GFF2556 0.37 -0.0
229,737 - GFF2556 0.37 -0.8
229,820 + GFF2556 0.43 +0.5
229,820 + GFF2556 0.43 -0.8
229,821 - GFF2556 0.43 +0.0
229,903 - GFF2556 0.48 +0.4
229,903 - GFF2556 0.48 -0.5
229,903 - GFF2556 0.48 -1.7
229,903 - GFF2556 0.48 +0.6
229,903 - GFF2556 0.48 -0.1
229,903 - GFF2556 0.48 -0.1
229,906 + GFF2556 0.48 -1.0
230,103 - GFF2556 0.61 +1.0
230,103 - GFF2556 0.61 -0.9
230,189 + GFF2556 0.67 +0.8
230,189 + GFF2556 0.67 +0.2
230,190 - GFF2556 0.67 -0.5
230,321 + GFF2556 0.76 +0.0
230,321 + GFF2556 0.76 +1.6
230,321 + GFF2556 0.76 -0.7
230,322 - GFF2556 0.76 +0.7
230,322 - GFF2556 0.76 +0.1
230,322 - GFF2556 0.76 +0.0
230,327 + GFF2556 0.76 -1.0
230,327 + GFF2556 0.76 +0.6
230,327 + GFF2556 0.76 +1.0
230,328 - GFF2556 0.76 +0.0
230,328 - GFF2556 0.76 +0.3
230,328 - GFF2556 0.76 -0.2
230,328 - GFF2556 0.76 -0.4
230,328 - GFF2556 0.76 +0.1
230,328 - GFF2556 0.76 +0.1
230,328 - GFF2556 0.76 -0.3
230,328 - GFF2556 0.76 +0.9
230,368 + GFF2556 0.79 -1.4
230,369 - GFF2556 0.79 -0.8
230,378 + GFF2556 0.79 -0.2
230,378 + GFF2556 0.79 +0.7
230,379 - GFF2556 0.79 -0.1
230,505 + GFF2556 0.88 -0.4
230,507 + GFF2556 0.88 +0.8
230,507 + GFF2556 0.88 -1.0
230,507 + GFF2556 0.88 -1.1
230,507 + GFF2556 0.88 +0.2
230,508 - GFF2556 0.88 -0.3
230,508 - GFF2556 0.88 -0.2
230,508 - GFF2556 0.88 -0.6
230,536 + GFF2556 0.90 +0.0
230,536 + GFF2556 0.90 -1.2
230,536 + GFF2556 0.90 +0.4
230,737 + +0.6
230,738 - -0.3
230,738 - -0.6
230,817 + +0.4
230,930 - GFF2557 0.15 -0.8
230,953 + GFF2557 0.17 +0.2
230,954 - GFF2557 0.17 -1.6
230,954 - GFF2557 0.17 -0.6
230,992 + GFF2557 0.21 +0.7
230,993 - GFF2557 0.21 -0.0
231,088 - GFF2557 0.31 -0.4
231,166 + GFF2557 0.38 -0.4
231,166 + GFF2557 0.38 -0.6
231,166 + GFF2557 0.38 +0.2
231,166 + GFF2557 0.38 +0.2
231,166 + GFF2557 0.38 -0.8
231,166 + GFF2557 0.38 +0.4
231,166 + GFF2557 0.38 +0.2
231,167 - GFF2557 0.38 +0.2
231,167 - GFF2557 0.38 -0.9
231,167 - GFF2557 0.38 +1.4
231,167 - GFF2557 0.38 +0.1
231,167 - GFF2557 0.38 -0.3
231,167 - GFF2557 0.38 -0.1
231,167 - GFF2557 0.38 -0.7
231,167 - GFF2557 0.38 -1.3
231,167 - GFF2557 0.38 +1.0
231,167 - GFF2557 0.38 -0.5
231,167 - GFF2557 0.38 +0.7
231,167 - GFF2557 0.38 -0.7
231,269 - GFF2557 0.48 -1.9
231,403 + GFF2557 0.61 -0.8
231,448 + GFF2557 0.66 -0.4
231,448 + GFF2557 0.66 +0.1
231,448 + GFF2557 0.66 +0.3
231,448 + GFF2557 0.66 -0.3
231,449 - GFF2557 0.66 -0.1
231,457 + GFF2557 0.67 -0.3
231,457 + GFF2557 0.67 +0.1
231,457 + GFF2557 0.67 -0.7
231,475 + GFF2557 0.69 -0.1
231,476 - GFF2557 0.69 +1.2
231,490 + GFF2557 0.70 +0.0
231,490 + GFF2557 0.70 -0.1
231,491 - GFF2557 0.70 -0.4

Or see this region's nucleotide sequence