Strain Fitness in Xanthobacter sp. DMC5 around GFF2551

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2550 and GFF2551 are separated by 49 nucleotidesGFF2551 and GFF2552 are separated by 134 nucleotidesGFF2552 and GFF2553 are separated by 82 nucleotides GFF2550 - Inner membrane ABC transporter permease protein YcjO, at 222,768 to 223,709 GFF2550 GFF2551 - Inner membrane ABC transporter permease protein YcjP, at 223,759 to 224,649 GFF2551 GFF2552 - hypothetical protein, at 224,784 to 225,287 GFF2552 GFF2553 - Mannitol 2-dehydrogenase, at 225,370 to 226,848 GFF2553 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.979 kb on - strand, within GFF2550at 223.035 kb on + strand, within GFF2550at 223.035 kb on + strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.058 kb on + strand, within GFF2550at 223.059 kb on - strand, within GFF2550at 223.203 kb on + strand, within GFF2550at 223.206 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.425 kb on + strand, within GFF2550at 223.425 kb on + strand, within GFF2550at 223.512 kb on + strand, within GFF2550at 223.512 kb on + strand, within GFF2550at 223.513 kb on - strand, within GFF2550at 223.513 kb on - strand, within GFF2550at 223.662 kb on + strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.810 kb on + strandat 223.810 kb on + strandat 223.811 kb on - strandat 223.811 kb on - strandat 223.891 kb on + strand, within GFF2551at 223.948 kb on + strand, within GFF2551at 223.949 kb on - strand, within GFF2551at 223.993 kb on + strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 224.041 kb on + strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.064 kb on + strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.159 kb on - strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.594 kb on - strandat 224.594 kb on - strandat 224.597 kb on - strandat 224.611 kb on + strandat 224.611 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.778 kb on + strandat 224.779 kb on - strandat 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 225.285 kb on + strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.304 kb on + strandat 225.304 kb on + strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.578 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
222,897 + GFF2550 0.14 -0.3
222,897 + GFF2550 0.14 -0.1
222,897 + GFF2550 0.14 -0.8
222,897 + GFF2550 0.14 +0.5
222,898 - GFF2550 0.14 -0.6
222,898 - GFF2550 0.14 +0.5
222,898 - GFF2550 0.14 -0.9
222,898 - GFF2550 0.14 +1.3
222,978 + GFF2550 0.22 +0.0
222,978 + GFF2550 0.22 +1.5
222,978 + GFF2550 0.22 -0.2
222,979 - GFF2550 0.22 -0.2
223,035 + GFF2550 0.28 +1.4
223,035 + GFF2550 0.28 +0.3
223,036 - GFF2550 0.28 -0.6
223,036 - GFF2550 0.28 -0.5
223,036 - GFF2550 0.28 -0.6
223,058 + GFF2550 0.31 +0.5
223,059 - GFF2550 0.31 +0.2
223,203 + GFF2550 0.46 +0.6
223,206 + GFF2550 0.46 +1.3
223,243 + GFF2550 0.50 -0.4
223,243 + GFF2550 0.50 +0.9
223,243 + GFF2550 0.50 +0.2
223,425 + GFF2550 0.70 -0.8
223,425 + GFF2550 0.70 +0.6
223,512 + GFF2550 0.79 +0.1
223,512 + GFF2550 0.79 +0.9
223,513 - GFF2550 0.79 -0.4
223,513 - GFF2550 0.79 -1.4
223,662 + -0.1
223,663 - -0.1
223,663 - -1.1
223,663 - +1.2
223,663 - -0.6
223,810 + -0.4
223,810 + +1.4
223,811 - +1.1
223,811 - +0.7
223,891 + GFF2551 0.15 -0.2
223,948 + GFF2551 0.21 -0.7
223,949 - GFF2551 0.21 +0.0
223,993 + GFF2551 0.26 -0.6
223,994 - GFF2551 0.26 -0.2
223,994 - GFF2551 0.26 -0.2
223,994 - GFF2551 0.26 -0.2
224,041 + GFF2551 0.32 -0.1
224,042 - GFF2551 0.32 -1.3
224,042 - GFF2551 0.32 -0.3
224,042 - GFF2551 0.32 -0.3
224,042 - GFF2551 0.32 -0.0
224,042 - GFF2551 0.32 -1.7
224,064 + GFF2551 0.34 -0.3
224,065 - GFF2551 0.34 -0.8
224,065 - GFF2551 0.34 +0.2
224,065 - GFF2551 0.34 +0.7
224,096 - GFF2551 0.38 +0.7
224,096 - GFF2551 0.38 -0.4
224,159 - GFF2551 0.45 +1.4
224,221 + GFF2551 0.52 -0.2
224,221 + GFF2551 0.52 -0.1
224,221 + GFF2551 0.52 -1.2
224,251 + GFF2551 0.55 -0.2
224,251 + GFF2551 0.55 +0.4
224,252 - GFF2551 0.55 -0.1
224,252 - GFF2551 0.55 +0.0
224,252 - GFF2551 0.55 -1.0
224,252 - GFF2551 0.55 -0.6
224,296 + GFF2551 0.60 +0.5
224,296 + GFF2551 0.60 +1.0
224,296 + GFF2551 0.60 -0.8
224,297 - GFF2551 0.60 -1.1
224,297 - GFF2551 0.60 -0.5
224,297 - GFF2551 0.60 +0.1
224,453 - GFF2551 0.78 -1.8
224,453 - GFF2551 0.78 -0.4
224,533 + GFF2551 0.87 -0.9
224,533 + GFF2551 0.87 -0.1
224,534 - GFF2551 0.87 +0.0
224,534 - GFF2551 0.87 -0.4
224,534 - GFF2551 0.87 +0.3
224,594 - -0.2
224,594 - +0.4
224,597 - +0.3
224,611 + +0.8
224,611 + -0.6
224,614 + -2.4
224,614 + +0.6
224,614 + -0.3
224,614 + -0.2
224,615 - -0.5
224,615 - +2.0
224,615 - -0.6
224,615 - -0.6
224,615 - +0.8
224,615 - +1.6
224,615 - -0.4
224,615 - -1.2
224,615 - -0.0
224,693 + +1.1
224,693 + +0.0
224,693 + -0.3
224,694 - +0.1
224,694 - +0.5
224,694 - -0.2
224,694 - +2.0
224,694 - -0.1
224,778 + -0.6
224,779 - -0.9
224,844 + GFF2552 0.12 -0.6
224,844 + GFF2552 0.12 +0.4
224,844 + GFF2552 0.12 +1.1
224,844 + GFF2552 0.12 -0.3
224,844 + GFF2552 0.12 +0.0
224,844 + GFF2552 0.12 +0.1
224,845 - GFF2552 0.12 +1.4
224,845 - GFF2552 0.12 +1.1
224,845 - GFF2552 0.12 -0.3
224,845 - GFF2552 0.12 -0.1
224,845 - GFF2552 0.12 +0.2
224,845 - GFF2552 0.12 -1.3
224,845 - GFF2552 0.12 +0.6
225,285 + -1.1
225,286 - +0.2
225,286 - -2.0
225,286 - +0.7
225,286 - +0.9
225,286 - +0.4
225,304 + +0.4
225,304 + -0.2
225,305 - +0.4
225,305 - +0.1
225,305 - +0.6
225,577 + GFF2553 0.14 +0.5
225,577 + GFF2553 0.14 -0.6
225,577 + GFF2553 0.14 -0.2
225,577 + GFF2553 0.14 +1.0
225,577 + GFF2553 0.14 +0.9
225,577 + GFF2553 0.14 -0.1
225,577 + GFF2553 0.14 -0.9
225,578 - GFF2553 0.14 +0.2
225,618 - GFF2553 0.17 +1.7
225,618 - GFF2553 0.17 -0.7
225,618 - GFF2553 0.17 -0.3

Or see this region's nucleotide sequence