Strain Fitness in Xanthobacter sp. DMC5 around GFF2550

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2549 and GFF2550 are separated by 177 nucleotidesGFF2550 and GFF2551 are separated by 49 nucleotides GFF2549 - hypothetical protein, at 221,277 to 222,590 GFF2549 GFF2550 - Inner membrane ABC transporter permease protein YcjO, at 222,768 to 223,709 GFF2550 GFF2551 - Inner membrane ABC transporter permease protein YcjP, at 223,759 to 224,649 GFF2551 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 222.003 kb on + strand, within GFF2549at 222.003 kb on + strand, within GFF2549at 222.003 kb on + strand, within GFF2549at 222.004 kb on - strand, within GFF2549at 222.018 kb on + strand, within GFF2549at 222.018 kb on + strand, within GFF2549at 222.121 kb on - strand, within GFF2549at 222.121 kb on - strand, within GFF2549at 222.121 kb on - strand, within GFF2549at 222.121 kb on - strand, within GFF2549at 222.123 kb on + strand, within GFF2549at 222.244 kb on - strand, within GFF2549at 222.279 kb on + strand, within GFF2549at 222.279 kb on + strand, within GFF2549at 222.279 kb on + strand, within GFF2549at 222.280 kb on - strand, within GFF2549at 222.309 kb on + strand, within GFF2549at 222.309 kb on + strand, within GFF2549at 222.309 kb on + strand, within GFF2549at 222.310 kb on - strand, within GFF2549at 222.310 kb on - strand, within GFF2549at 222.310 kb on - strand, within GFF2549at 222.310 kb on - strand, within GFF2549at 222.339 kb on + strand, within GFF2549at 222.339 kb on + strand, within GFF2549at 222.340 kb on - strand, within GFF2549at 222.409 kb on - strand, within GFF2549at 222.409 kb on - strand, within GFF2549at 222.444 kb on + strand, within GFF2549at 222.583 kb on - strandat 222.625 kb on + strandat 222.625 kb on + strandat 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.897 kb on + strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.898 kb on - strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.978 kb on + strand, within GFF2550at 222.979 kb on - strand, within GFF2550at 223.035 kb on + strand, within GFF2550at 223.035 kb on + strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.036 kb on - strand, within GFF2550at 223.058 kb on + strand, within GFF2550at 223.059 kb on - strand, within GFF2550at 223.203 kb on + strand, within GFF2550at 223.206 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.243 kb on + strand, within GFF2550at 223.425 kb on + strand, within GFF2550at 223.425 kb on + strand, within GFF2550at 223.512 kb on + strand, within GFF2550at 223.512 kb on + strand, within GFF2550at 223.513 kb on - strand, within GFF2550at 223.513 kb on - strand, within GFF2550at 223.662 kb on + strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.663 kb on - strandat 223.810 kb on + strandat 223.810 kb on + strandat 223.811 kb on - strandat 223.811 kb on - strandat 223.891 kb on + strand, within GFF2551at 223.948 kb on + strand, within GFF2551at 223.949 kb on - strand, within GFF2551at 223.993 kb on + strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 224.041 kb on + strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.064 kb on + strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.159 kb on - strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.594 kb on - strandat 224.594 kb on - strandat 224.597 kb on - strandat 224.611 kb on + strandat 224.611 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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222,003 + GFF2549 0.55 -0.2
222,003 + GFF2549 0.55 -0.3
222,003 + GFF2549 0.55 -0.1
222,004 - GFF2549 0.55 -0.1
222,018 + GFF2549 0.56 +0.9
222,018 + GFF2549 0.56 +0.5
222,121 - GFF2549 0.64 +1.2
222,121 - GFF2549 0.64 +0.1
222,121 - GFF2549 0.64 -2.7
222,121 - GFF2549 0.64 +1.2
222,123 + GFF2549 0.64 -0.1
222,244 - GFF2549 0.74 +0.7
222,279 + GFF2549 0.76 +0.5
222,279 + GFF2549 0.76 +0.6
222,279 + GFF2549 0.76 +0.2
222,280 - GFF2549 0.76 -1.4
222,309 + GFF2549 0.79 -0.5
222,309 + GFF2549 0.79 -1.4
222,309 + GFF2549 0.79 -0.7
222,310 - GFF2549 0.79 -0.9
222,310 - GFF2549 0.79 -0.6
222,310 - GFF2549 0.79 +0.9
222,310 - GFF2549 0.79 -0.4
222,339 + GFF2549 0.81 +0.2
222,339 + GFF2549 0.81 +0.5
222,340 - GFF2549 0.81 +0.5
222,409 - GFF2549 0.86 +0.6
222,409 - GFF2549 0.86 -0.2
222,444 + GFF2549 0.89 -1.1
222,583 - -0.6
222,625 + -0.2
222,625 + -0.8
222,897 + GFF2550 0.14 -0.3
222,897 + GFF2550 0.14 -0.1
222,897 + GFF2550 0.14 -0.8
222,897 + GFF2550 0.14 +0.5
222,898 - GFF2550 0.14 -0.6
222,898 - GFF2550 0.14 +0.5
222,898 - GFF2550 0.14 -0.9
222,898 - GFF2550 0.14 +1.3
222,978 + GFF2550 0.22 +0.0
222,978 + GFF2550 0.22 +1.5
222,978 + GFF2550 0.22 -0.2
222,979 - GFF2550 0.22 -0.2
223,035 + GFF2550 0.28 +1.4
223,035 + GFF2550 0.28 +0.3
223,036 - GFF2550 0.28 -0.6
223,036 - GFF2550 0.28 -0.5
223,036 - GFF2550 0.28 -0.6
223,058 + GFF2550 0.31 +0.5
223,059 - GFF2550 0.31 +0.2
223,203 + GFF2550 0.46 +0.6
223,206 + GFF2550 0.46 +1.3
223,243 + GFF2550 0.50 -0.4
223,243 + GFF2550 0.50 +0.9
223,243 + GFF2550 0.50 +0.2
223,425 + GFF2550 0.70 -0.8
223,425 + GFF2550 0.70 +0.6
223,512 + GFF2550 0.79 +0.1
223,512 + GFF2550 0.79 +0.9
223,513 - GFF2550 0.79 -0.4
223,513 - GFF2550 0.79 -1.4
223,662 + -0.1
223,663 - -0.1
223,663 - -1.1
223,663 - +1.2
223,663 - -0.6
223,810 + -0.4
223,810 + +1.4
223,811 - +1.1
223,811 - +0.7
223,891 + GFF2551 0.15 -0.2
223,948 + GFF2551 0.21 -0.7
223,949 - GFF2551 0.21 +0.0
223,993 + GFF2551 0.26 -0.6
223,994 - GFF2551 0.26 -0.2
223,994 - GFF2551 0.26 -0.2
223,994 - GFF2551 0.26 -0.2
224,041 + GFF2551 0.32 -0.1
224,042 - GFF2551 0.32 -1.3
224,042 - GFF2551 0.32 -0.3
224,042 - GFF2551 0.32 -0.3
224,042 - GFF2551 0.32 -0.0
224,042 - GFF2551 0.32 -1.7
224,064 + GFF2551 0.34 -0.3
224,065 - GFF2551 0.34 -0.8
224,065 - GFF2551 0.34 +0.2
224,065 - GFF2551 0.34 +0.7
224,096 - GFF2551 0.38 +0.7
224,096 - GFF2551 0.38 -0.4
224,159 - GFF2551 0.45 +1.4
224,221 + GFF2551 0.52 -0.2
224,221 + GFF2551 0.52 -0.1
224,221 + GFF2551 0.52 -1.2
224,251 + GFF2551 0.55 -0.2
224,251 + GFF2551 0.55 +0.4
224,252 - GFF2551 0.55 -0.1
224,252 - GFF2551 0.55 +0.0
224,252 - GFF2551 0.55 -1.0
224,252 - GFF2551 0.55 -0.6
224,296 + GFF2551 0.60 +0.5
224,296 + GFF2551 0.60 +1.0
224,296 + GFF2551 0.60 -0.8
224,297 - GFF2551 0.60 -1.1
224,297 - GFF2551 0.60 -0.5
224,297 - GFF2551 0.60 +0.1
224,453 - GFF2551 0.78 -1.8
224,453 - GFF2551 0.78 -0.4
224,533 + GFF2551 0.87 -0.9
224,533 + GFF2551 0.87 -0.1
224,534 - GFF2551 0.87 +0.0
224,534 - GFF2551 0.87 -0.4
224,534 - GFF2551 0.87 +0.3
224,594 - -0.2
224,594 - +0.4
224,597 - +0.3
224,611 + +0.8
224,611 + -0.6
224,614 + -2.4
224,614 + +0.6
224,614 + -0.3
224,614 + -0.2
224,615 - -0.5
224,615 - +2.0
224,615 - -0.6
224,615 - -0.6
224,615 - +0.8
224,615 - +1.6
224,615 - -0.4
224,615 - -1.2
224,615 - -0.0
224,693 + +1.1
224,693 + +0.0
224,693 + -0.3
224,694 - +0.1
224,694 - +0.5
224,694 - -0.2
224,694 - +2.0
224,694 - -0.1

Or see this region's nucleotide sequence