Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2547 and GFF2548 are separated by 358 nucleotides GFF2548 and GFF2549 are separated by 114 nucleotides
GFF2547 - 2-ketogluconate reductase, at 218,774 to 219,730
GFF2547
GFF2548 - Diacetylchitobiose uptake system ATP-binding protein MsiK, at 220,089 to 221,162
GFF2548
GFF2549 - hypothetical protein, at 221,277 to 222,590
GFF2549
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.180 kb on + strand, within GFF2547 at 219.189 kb on + strand, within GFF2547 at 219.190 kb on - strand, within GFF2547 at 219.222 kb on + strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.330 kb on + strand, within GFF2547 at 219.504 kb on + strand, within GFF2547 at 219.505 kb on - strand, within GFF2547 at 219.789 kb on - strand at 219.789 kb on - strand at 219.871 kb on - strand at 219.876 kb on + strand at 219.876 kb on + strand at 219.877 kb on - strand at 220.125 kb on + strand at 220.126 kb on - strand at 220.126 kb on - strand at 220.338 kb on + strand, within GFF2548 at 220.338 kb on + strand, within GFF2548 at 220.339 kb on - strand, within GFF2548 at 220.373 kb on + strand, within GFF2548 at 220.373 kb on + strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.653 kb on + strand, within GFF2548 at 220.654 kb on - strand, within GFF2548 at 220.752 kb on + strand, within GFF2548 at 220.752 kb on + strand, within GFF2548 at 220.752 kb on + strand, within GFF2548 at 220.752 kb on + strand, within GFF2548 at 220.752 kb on + strand, within GFF2548 at 220.920 kb on + strand, within GFF2548 at 220.920 kb on + strand, within GFF2548 at 220.921 kb on - strand, within GFF2548 at 221.472 kb on + strand, within GFF2549 at 221.503 kb on - strand, within GFF2549 at 221.582 kb on + strand, within GFF2549 at 221.584 kb on + strand, within GFF2549 at 221.616 kb on + strand, within GFF2549 at 221.617 kb on - strand, within GFF2549 at 221.671 kb on - strand, within GFF2549 at 221.671 kb on - strand, within GFF2549 at 221.671 kb on - strand, within GFF2549 at 221.679 kb on + strand, within GFF2549 at 221.680 kb on - strand, within GFF2549 at 221.680 kb on - strand, within GFF2549 at 221.680 kb on - strand, within GFF2549 at 221.700 kb on + strand, within GFF2549 at 221.700 kb on + strand, within GFF2549 at 221.700 kb on + strand, within GFF2549 at 221.700 kb on + strand, within GFF2549 at 221.700 kb on + strand, within GFF2549 at 221.701 kb on - strand, within GFF2549 at 221.701 kb on - strand, within GFF2549 at 221.763 kb on + strand, within GFF2549 at 221.763 kb on + strand, within GFF2549 at 221.764 kb on - strand, within GFF2549 at 221.764 kb on - strand, within GFF2549 at 222.003 kb on + strand, within GFF2549 at 222.003 kb on + strand, within GFF2549 at 222.003 kb on + strand, within GFF2549 at 222.004 kb on - strand, within GFF2549 at 222.018 kb on + strand, within GFF2549 at 222.018 kb on + strand, within GFF2549 at 222.121 kb on - strand, within GFF2549 at 222.121 kb on - strand, within GFF2549 at 222.121 kb on - strand, within GFF2549 at 222.121 kb on - strand, within GFF2549 at 222.123 kb on + strand, within GFF2549
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 219,180 + GFF2547 0.42 -0.6 219,189 + GFF2547 0.43 +0.4 219,190 - GFF2547 0.43 -1.8 219,222 + GFF2547 0.47 +1.5 219,223 - GFF2547 0.47 +0.4 219,223 - GFF2547 0.47 -1.7 219,330 + GFF2547 0.58 -0.3 219,504 + GFF2547 0.76 +1.0 219,505 - GFF2547 0.76 -0.2 219,789 - +2.0 219,789 - -0.3 219,871 - +0.3 219,876 + -1.2 219,876 + -0.3 219,877 - +0.9 220,125 + +0.2 220,126 - +0.2 220,126 - -0.2 220,338 + GFF2548 0.23 -2.2 220,338 + GFF2548 0.23 -0.7 220,339 - GFF2548 0.23 -0.4 220,373 + GFF2548 0.26 -0.1 220,373 + GFF2548 0.26 -0.2 220,374 - GFF2548 0.27 +0.1 220,374 - GFF2548 0.27 +1.7 220,374 - GFF2548 0.27 -0.2 220,653 + GFF2548 0.53 -1.4 220,654 - GFF2548 0.53 -1.2 220,752 + GFF2548 0.62 -0.3 220,752 + GFF2548 0.62 +0.0 220,752 + GFF2548 0.62 -1.1 220,752 + GFF2548 0.62 -0.4 220,752 + GFF2548 0.62 -1.2 220,920 + GFF2548 0.77 -2.4 220,920 + GFF2548 0.77 -0.2 220,921 - GFF2548 0.77 -1.0 221,472 + GFF2549 0.15 +0.4 221,503 - GFF2549 0.17 -0.2 221,582 + GFF2549 0.23 -0.3 221,584 + GFF2549 0.23 +0.4 221,616 + GFF2549 0.26 +0.0 221,617 - GFF2549 0.26 +0.4 221,671 - GFF2549 0.30 +0.0 221,671 - GFF2549 0.30 -0.0 221,671 - GFF2549 0.30 -0.5 221,679 + GFF2549 0.31 +0.5 221,680 - GFF2549 0.31 -1.2 221,680 - GFF2549 0.31 +1.0 221,680 - GFF2549 0.31 +0.1 221,700 + GFF2549 0.32 -0.6 221,700 + GFF2549 0.32 +0.3 221,700 + GFF2549 0.32 +1.0 221,700 + GFF2549 0.32 -1.0 221,700 + GFF2549 0.32 -0.1 221,701 - GFF2549 0.32 +0.7 221,701 - GFF2549 0.32 +1.1 221,763 + GFF2549 0.37 -0.2 221,763 + GFF2549 0.37 -0.2 221,764 - GFF2549 0.37 -1.2 221,764 - GFF2549 0.37 +1.6 222,003 + GFF2549 0.55 -0.2 222,003 + GFF2549 0.55 -0.3 222,003 + GFF2549 0.55 -0.1 222,004 - GFF2549 0.55 -0.1 222,018 + GFF2549 0.56 +0.9 222,018 + GFF2549 0.56 +0.5 222,121 - GFF2549 0.64 +1.2 222,121 - GFF2549 0.64 +0.1 222,121 - GFF2549 0.64 -2.7 222,121 - GFF2549 0.64 +1.2 222,123 + GFF2549 0.64 -0.1
Or see this region's nucleotide sequence