Strain Fitness in Xanthobacter sp. DMC5 around GFF2536

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2535 and GFF2536 are separated by 84 nucleotidesGFF2536 and GFF2537 are separated by 130 nucleotides GFF2535 - Formyl-CoA:oxalate CoA-transferase, at 204,963 to 206,240 GFF2535 GFF2536 - Sensor protein FixL, at 206,325 to 206,768 GFF2536 GFF2537 - Formyl-CoA:oxalate CoA-transferase, at 206,899 to 208,152 GFF2537 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1 2at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.636 kb on - strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.935 kb on + strand, within GFF2535at 205.950 kb on + strand, within GFF2535at 205.950 kb on + strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 206.010 kb on + strand, within GFF2535at 206.010 kb on + strand, within GFF2535at 206.011 kb on - strand, within GFF2535at 206.011 kb on - strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.059 kb on - strand, within GFF2535at 206.238 kb on + strandat 206.238 kb on + strandat 206.330 kb on + strandat 206.331 kb on - strandat 206.380 kb on - strand, within GFF2536at 206.521 kb on - strand, within GFF2536at 206.611 kb on + strand, within GFF2536at 206.767 kb on - strandat 206.767 kb on - strandat 206.767 kb on - strandat 206.767 kb on - strandat 207.076 kb on + strand, within GFF2537at 207.076 kb on + strand, within GFF2537at 207.298 kb on + strand, within GFF2537at 207.299 kb on - strand, within GFF2537at 207.311 kb on - strand, within GFF2537at 207.316 kb on + strand, within GFF2537at 207.316 kb on + strand, within GFF2537at 207.316 kb on + strand, within GFF2537at 207.316 kb on + strand, within GFF2537at 207.317 kb on - strand, within GFF2537at 207.317 kb on - strand, within GFF2537at 207.568 kb on + strand, within GFF2537at 207.568 kb on + strand, within GFF2537at 207.580 kb on + strand, within GFF2537at 207.580 kb on + strand, within GFF2537at 207.581 kb on - strand, within GFF2537at 207.589 kb on + strand, within GFF2537at 207.590 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.706 kb on + strand, within GFF2537at 207.707 kb on - strand, within GFF2537at 207.707 kb on - strand, within GFF2537at 207.707 kb on - strand, within GFF2537

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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205,374 + GFF2535 0.32 +0.7
205,374 + GFF2535 0.32 +0.4
205,374 + GFF2535 0.32 +1.1
205,375 - GFF2535 0.32 +0.9
205,375 - GFF2535 0.32 -0.8
205,375 - GFF2535 0.32 -2.3
205,375 - GFF2535 0.32 +0.0
205,375 - GFF2535 0.32 -1.0
205,635 + GFF2535 0.53 -0.4
205,635 + GFF2535 0.53 -0.7
205,636 - GFF2535 0.53 -0.4
205,758 + GFF2535 0.62 +0.8
205,758 + GFF2535 0.62 -1.5
205,758 + GFF2535 0.62 -0.3
205,758 + GFF2535 0.62 +0.1
205,758 + GFF2535 0.62 -0.3
205,764 + GFF2535 0.63 -1.7
205,764 + GFF2535 0.63 -1.2
205,764 + GFF2535 0.63 -0.1
205,764 + GFF2535 0.63 +0.5
205,764 + GFF2535 0.63 -0.1
205,764 + GFF2535 0.63 +0.6
205,764 + GFF2535 0.63 -0.8
205,764 + GFF2535 0.63 -1.0
205,764 + GFF2535 0.63 -0.6
205,764 + GFF2535 0.63 -0.2
205,765 - GFF2535 0.63 -0.6
205,765 - GFF2535 0.63 -0.3
205,765 - GFF2535 0.63 -0.1
205,765 - GFF2535 0.63 -2.4
205,935 + GFF2535 0.76 -0.7
205,950 + GFF2535 0.77 +0.2
205,950 + GFF2535 0.77 -0.2
205,951 - GFF2535 0.77 -0.3
205,951 - GFF2535 0.77 -0.2
205,951 - GFF2535 0.77 -2.0
206,010 + GFF2535 0.82 +0.5
206,010 + GFF2535 0.82 -0.9
206,011 - GFF2535 0.82 +0.6
206,011 - GFF2535 0.82 -1.3
206,058 + GFF2535 0.86 -1.7
206,058 + GFF2535 0.86 -0.6
206,058 + GFF2535 0.86 -0.4
206,058 + GFF2535 0.86 +2.2
206,058 + GFF2535 0.86 -0.8
206,059 - GFF2535 0.86 -1.6
206,238 + -0.6
206,238 + +0.3
206,330 + +0.7
206,331 - +0.0
206,380 - GFF2536 0.12 +0.6
206,521 - GFF2536 0.44 +0.0
206,611 + GFF2536 0.64 -0.3
206,767 - -0.9
206,767 - -0.6
206,767 - -0.6
206,767 - +0.3
207,076 + GFF2537 0.14 -1.1
207,076 + GFF2537 0.14 +0.6
207,298 + GFF2537 0.32 -0.3
207,299 - GFF2537 0.32 +2.0
207,311 - GFF2537 0.33 -1.0
207,316 + GFF2537 0.33 -0.1
207,316 + GFF2537 0.33 -0.5
207,316 + GFF2537 0.33 -0.3
207,316 + GFF2537 0.33 -0.8
207,317 - GFF2537 0.33 +0.7
207,317 - GFF2537 0.33 +0.3
207,568 + GFF2537 0.53 -0.5
207,568 + GFF2537 0.53 +0.6
207,580 + GFF2537 0.54 +0.5
207,580 + GFF2537 0.54 +1.0
207,581 - GFF2537 0.54 +0.4
207,589 + GFF2537 0.55 +0.2
207,590 - GFF2537 0.55 +1.2
207,701 - GFF2537 0.64 -0.5
207,701 - GFF2537 0.64 -2.0
207,701 - GFF2537 0.64 -0.2
207,701 - GFF2537 0.64 +0.2
207,701 - GFF2537 0.64 +0.3
207,701 - GFF2537 0.64 +0.2
207,701 - GFF2537 0.64 +1.2
207,701 - GFF2537 0.64 -0.6
207,701 - GFF2537 0.64 +1.1
207,706 + GFF2537 0.64 -0.2
207,707 - GFF2537 0.64 -0.6
207,707 - GFF2537 0.64 +1.5
207,707 - GFF2537 0.64 +0.2

Or see this region's nucleotide sequence