Strain Fitness in Xanthobacter sp. DMC5 around GFF2445

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2444 and GFF2445 are separated by 35 nucleotidesGFF2445 and GFF2446 are separated by 88 nucleotides GFF2444 - Phosphoribulokinase, chromosomal, at 101,820 to 102,695 GFF2444 GFF2445 - Fructose-1,6-bisphosphatase class 1, at 102,731 to 103,825 GFF2445 GFF2446 - Protein CbbX, at 103,914 to 104,867 GFF2446 Position (kb) 102 103 104Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 101.809 kb on - strandat 101.809 kb on - strandat 101.892 kb on + strandat 101.963 kb on - strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.124 kb on + strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.373 kb on + strand, within GFF2444at 102.374 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.437 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.570 kb on - strand, within GFF2444at 102.735 kb on - strandat 102.798 kb on + strandat 102.799 kb on - strandat 102.951 kb on + strand, within GFF2445at 102.951 kb on + strand, within GFF2445at 102.952 kb on - strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.123 kb on - strand, within GFF2445at 103.152 kb on + strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.305 kb on + strand, within GFF2445at 103.306 kb on - strand, within GFF2445at 103.561 kb on - strand, within GFF2445at 103.916 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 104.131 kb on + strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.132 kb on - strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.170 kb on + strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.171 kb on - strand, within GFF2446at 104.224 kb on + strand, within GFF2446at 104.224 kb on + strand, within GFF2446at 104.305 kb on + strand, within GFF2446at 104.306 kb on - strand, within GFF2446at 104.413 kb on + strand, within GFF2446at 104.414 kb on - strand, within GFF2446at 104.416 kb on + strand, within GFF2446at 104.456 kb on + strand, within GFF2446at 104.492 kb on + strand, within GFF2446at 104.493 kb on - strand, within GFF2446at 104.493 kb on - strand, within GFF2446at 104.494 kb on + strand, within GFF2446at 104.494 kb on + strand, within GFF2446at 104.495 kb on - strand, within GFF2446at 104.495 kb on - strand, within GFF2446at 104.548 kb on + strand, within GFF2446at 104.548 kb on + strand, within GFF2446at 104.549 kb on - strand, within GFF2446at 104.549 kb on - strand, within GFF2446at 104.549 kb on - strand, within GFF2446

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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101,809 - -0.7
101,809 - +0.6
101,892 + -1.6
101,963 - GFF2444 0.16 -2.2
102,115 + GFF2444 0.34 -3.0
102,115 + GFF2444 0.34 -3.7
102,116 - GFF2444 0.34 -2.6
102,116 - GFF2444 0.34 -2.4
102,116 - GFF2444 0.34 -0.8
102,124 + GFF2444 0.35 -3.3
102,125 - GFF2444 0.35 -1.9
102,125 - GFF2444 0.35 -0.9
102,307 + GFF2444 0.56 -2.9
102,307 + GFF2444 0.56 -3.3
102,308 - GFF2444 0.56 -2.7
102,308 - GFF2444 0.56 +0.0
102,373 + GFF2444 0.63 -1.9
102,374 - GFF2444 0.63 -1.8
102,404 - GFF2444 0.67 -3.5
102,404 - GFF2444 0.67 -1.4
102,437 - GFF2444 0.70 -2.2
102,548 - GFF2444 0.83 -1.7
102,548 - GFF2444 0.83 -3.1
102,548 - GFF2444 0.83 -2.7
102,570 - GFF2444 0.86 -3.5
102,735 - -0.4
102,798 + -2.1
102,799 - -3.3
102,951 + GFF2445 0.20 -2.4
102,951 + GFF2445 0.20 -1.9
102,952 - GFF2445 0.20 -2.3
102,978 + GFF2445 0.23 -2.5
102,978 + GFF2445 0.23 -1.0
102,979 - GFF2445 0.23 -1.4
102,979 - GFF2445 0.23 -1.4
103,008 + GFF2445 0.25 -4.4
103,008 + GFF2445 0.25 -2.3
103,008 + GFF2445 0.25 -2.9
103,008 + GFF2445 0.25 -2.0
103,008 + GFF2445 0.25 -2.0
103,008 + GFF2445 0.25 -3.9
103,009 - GFF2445 0.25 -0.8
103,009 - GFF2445 0.25 -1.6
103,009 - GFF2445 0.25 -1.8
103,009 - GFF2445 0.25 -2.0
103,009 - GFF2445 0.25 -2.2
103,009 - GFF2445 0.25 -1.8
103,009 - GFF2445 0.25 -3.2
103,009 - GFF2445 0.25 -3.2
103,009 - GFF2445 0.25 -3.7
103,009 - GFF2445 0.25 -1.5
103,009 - GFF2445 0.25 -2.3
103,009 - GFF2445 0.25 -4.0
103,122 + GFF2445 0.36 -2.5
103,122 + GFF2445 0.36 -2.6
103,122 + GFF2445 0.36 -3.0
103,123 - GFF2445 0.36 -3.7
103,152 + GFF2445 0.38 -1.7
103,153 - GFF2445 0.39 -3.2
103,153 - GFF2445 0.39 -2.3
103,305 + GFF2445 0.52 -4.0
103,306 - GFF2445 0.53 -2.6
103,561 - GFF2445 0.76 -3.6
103,916 - -1.3
103,934 - -0.8
103,934 - -0.2
103,934 - +0.1
104,131 + GFF2446 0.23 -2.2
104,132 - GFF2446 0.23 -2.7
104,132 - GFF2446 0.23 -2.0
104,132 - GFF2446 0.23 -0.8
104,170 + GFF2446 0.27 -3.8
104,170 + GFF2446 0.27 -2.8
104,170 + GFF2446 0.27 -3.0
104,170 + GFF2446 0.27 -3.3
104,171 - GFF2446 0.27 -2.5
104,171 - GFF2446 0.27 -3.2
104,171 - GFF2446 0.27 -3.1
104,171 - GFF2446 0.27 -2.8
104,224 + GFF2446 0.32 +0.6
104,224 + GFF2446 0.32 -1.9
104,305 + GFF2446 0.41 -3.5
104,306 - GFF2446 0.41 -1.6
104,413 + GFF2446 0.52 -3.1
104,414 - GFF2446 0.52 -0.8
104,416 + GFF2446 0.53 -1.2
104,456 + GFF2446 0.57 -2.3
104,492 + GFF2446 0.61 -1.4
104,493 - GFF2446 0.61 -2.8
104,493 - GFF2446 0.61 -0.8
104,494 + GFF2446 0.61 -3.0
104,494 + GFF2446 0.61 -2.8
104,495 - GFF2446 0.61 -2.2
104,495 - GFF2446 0.61 -3.4
104,548 + GFF2446 0.66 -2.2
104,548 + GFF2446 0.66 -2.0
104,549 - GFF2446 0.67 -2.0
104,549 - GFF2446 0.67 +0.0
104,549 - GFF2446 0.67 -4.0

Or see this region's nucleotide sequence