Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2387 and GFF2388 are separated by 6 nucleotides GFF2388 and GFF2389 overlap by 14 nucleotides GFF2389 and GFF2390 are separated by 60 nucleotides GFF2390 and GFF2391 are separated by 270 nucleotides
GFF2387 - Phosphoadenosine phosphosulfate reductase, at 40,530 to 41,240
GFF2387
GFF2388 - hypothetical protein, at 41,247 to 41,759
GFF2388
GFF2389 - Sulfite reductase [ferredoxin], at 41,746 to 43,398
GFF2389
GFF2390 - hypothetical protein, at 43,459 to 43,785
GFF2390
GFF2391 - 1,2-epoxyphenylacetyl-CoA isomerase, at 44,056 to 44,850
GFF2391
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 41.326 kb on + strand, within GFF2388 at 41.327 kb on - strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.339 kb on - strand, within GFF2388 at 41.339 kb on - strand, within GFF2388 at 41.506 kb on + strand, within GFF2388 at 41.507 kb on - strand, within GFF2388 at 41.566 kb on + strand, within GFF2388 at 41.567 kb on - strand, within GFF2388 at 41.620 kb on - strand, within GFF2388 at 41.843 kb on + strand at 42.258 kb on - strand, within GFF2389 at 42.258 kb on - strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.308 kb on + strand, within GFF2389 at 42.309 kb on - strand, within GFF2389 at 42.309 kb on - strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.663 kb on - strand, within GFF2389 at 42.663 kb on - strand, within GFF2389 at 42.692 kb on + strand, within GFF2389 at 42.692 kb on + strand, within GFF2389 at 42.693 kb on - strand, within GFF2389 at 42.693 kb on - strand, within GFF2389 at 42.717 kb on - strand, within GFF2389 at 42.765 kb on + strand, within GFF2389 at 42.767 kb on + strand, within GFF2389 at 42.767 kb on + strand, within GFF2389 at 42.767 kb on + strand, within GFF2389 at 42.768 kb on - strand, within GFF2389 at 42.768 kb on - strand, within GFF2389 at 42.768 kb on - strand, within GFF2389 at 42.917 kb on + strand, within GFF2389 at 42.965 kb on + strand, within GFF2389 at 42.966 kb on - strand, within GFF2389 at 43.166 kb on + strand, within GFF2389 at 43.166 kb on + strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.244 kb on + strand at 43.244 kb on + strand at 43.262 kb on + strand at 43.262 kb on + strand at 43.389 kb on - strand at 43.389 kb on - strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.806 kb on - strand at 43.928 kb on + strand at 43.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 41,326 + GFF2388 0.15 -1.0 41,327 - GFF2388 0.16 -2.8 41,338 + GFF2388 0.18 -1.8 41,338 + GFF2388 0.18 -3.2 41,339 - GFF2388 0.18 -0.3 41,339 - GFF2388 0.18 -3.6 41,506 + GFF2388 0.50 -1.7 41,507 - GFF2388 0.51 -3.6 41,566 + GFF2388 0.62 -1.7 41,567 - GFF2388 0.62 -1.7 41,620 - GFF2388 0.73 -2.4 41,843 + -2.2 42,258 - GFF2389 0.31 -2.4 42,258 - GFF2389 0.31 -2.4 42,302 + GFF2389 0.34 -2.9 42,302 + GFF2389 0.34 -0.6 42,302 + GFF2389 0.34 -2.3 42,302 + GFF2389 0.34 +0.0 42,308 + GFF2389 0.34 -2.0 42,309 - GFF2389 0.34 -1.6 42,309 - GFF2389 0.34 -2.7 42,662 + GFF2389 0.55 -0.3 42,662 + GFF2389 0.55 -2.3 42,662 + GFF2389 0.55 -2.3 42,662 + GFF2389 0.55 -3.0 42,663 - GFF2389 0.55 -1.3 42,663 - GFF2389 0.55 -1.0 42,692 + GFF2389 0.57 -1.4 42,692 + GFF2389 0.57 -3.3 42,693 - GFF2389 0.57 -1.3 42,693 - GFF2389 0.57 -1.8 42,717 - GFF2389 0.59 -3.8 42,765 + GFF2389 0.62 -1.1 42,767 + GFF2389 0.62 -1.3 42,767 + GFF2389 0.62 -2.8 42,767 + GFF2389 0.62 +0.0 42,768 - GFF2389 0.62 -2.2 42,768 - GFF2389 0.62 -3.7 42,768 - GFF2389 0.62 -3.3 42,917 + GFF2389 0.71 -0.9 42,965 + GFF2389 0.74 -2.7 42,966 - GFF2389 0.74 -2.0 43,166 + GFF2389 0.86 -1.1 43,166 + GFF2389 0.86 -0.9 43,167 - GFF2389 0.86 -1.6 43,167 - GFF2389 0.86 -2.3 43,167 - GFF2389 0.86 -1.0 43,244 + -2.4 43,244 + -2.5 43,262 + +0.4 43,262 + -2.3 43,389 - +0.0 43,389 - -1.8 43,394 + -2.0 43,394 + -1.7 43,394 + -2.7 43,394 + -0.6 43,394 + -2.5 43,395 - +0.0 43,395 - +0.0 43,395 - -2.7 43,395 - -0.5 43,395 - -2.9 43,395 - -4.0 43,395 - +0.0 43,395 - -2.0 43,395 - -1.6 43,395 - -2.3 43,395 - -2.6 43,395 - -2.4 43,395 - -0.6 43,395 - -1.8 43,395 - +0.0 43,395 - -2.2 43,806 - +0.9 43,928 + -0.9 43,986 - -1.2
Or see this region's nucleotide sequence