Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2283 and GFF2284 are separated by 66 nucleotides GFF2284 and GFF2285 are separated by 80 nucleotides GFF2285 and GFF2286 are separated by 188 nucleotides
GFF2283 - putative inner membrane transporter YedA, at 990,918 to 991,811
GFF2283
GFF2284 - Photosynthetic apparatus regulatory protein RegA, at 991,878 to 992,426
GFF2284
GFF2285 - Sensor histidine kinase RegB, at 992,507 to 993,847
GFF2285
GFF2286 - hypothetical protein, at 994,036 to 995,460
GFF2286
Position (kb) 992
993
994 Strain fitness (log2 ratio) -2
-1
0
1 at 991.624 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 991.675 kb on - strand, within GFF2283 at 992.504 kb on - strand at 992.504 kb on - strand at 992.509 kb on - strand at 992.737 kb on - strand, within GFF2285 at 992.737 kb on - strand, within GFF2285 at 992.737 kb on - strand, within GFF2285 at 992.890 kb on - strand, within GFF2285 at 993.112 kb on + strand, within GFF2285 at 993.520 kb on - strand, within GFF2285 at 993.572 kb on - strand, within GFF2285 at 993.830 kb on + strand at 993.853 kb on - strand at 993.901 kb on + strand at 993.910 kb on + strand at 993.910 kb on + strand at 993.911 kb on - strand at 994.117 kb on + strand at 994.117 kb on + strand at 994.118 kb on - strand at 994.129 kb on + strand at 994.129 kb on + strand at 994.290 kb on + strand, within GFF2286 at 994.504 kb on + strand, within GFF2286 at 994.504 kb on + strand, within GFF2286 at 994.571 kb on - strand, within GFF2286 at 994.571 kb on - strand, within GFF2286 at 994.579 kb on + strand, within GFF2286
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 991,624 - GFF2283 0.79 -0.3 991,675 - GFF2283 0.85 +0.3 991,675 - GFF2283 0.85 +1.1 991,675 - GFF2283 0.85 +0.0 992,504 - -0.7 992,504 - -0.4 992,509 - -0.3 992,737 - GFF2285 0.17 +0.1 992,737 - GFF2285 0.17 +0.0 992,737 - GFF2285 0.17 -0.9 992,890 - GFF2285 0.29 -2.3 993,112 + GFF2285 0.45 +0.1 993,520 - GFF2285 0.76 -0.4 993,572 - GFF2285 0.79 -1.0 993,830 + +1.3 993,853 - +0.6 993,901 + -0.9 993,910 + -0.0 993,910 + +0.4 993,911 - -1.2 994,117 + +0.0 994,117 + -0.2 994,118 - -0.3 994,129 + +1.0 994,129 + -0.8 994,290 + GFF2286 0.18 +1.3 994,504 + GFF2286 0.33 +1.1 994,504 + GFF2286 0.33 -0.0 994,571 - GFF2286 0.38 -0.7 994,571 - GFF2286 0.38 +0.5 994,579 + GFF2286 0.38 -1.5
Or see this region's nucleotide sequence