Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2276 and GFF2277 are separated by 6 nucleotides GFF2277 and GFF2278 are separated by 23 nucleotides GFF2278 and GFF2279 are separated by 204 nucleotides
GFF2276 - NAD(P)H azoreductase, at 984,138 to 984,974
GFF2276
GFF2277 - hypothetical protein, at 984,981 to 985,427
GFF2277
GFF2278 - (2S)-methylsuccinyl-CoA dehydrogenase, at 985,451 to 987,142
GFF2278
GFF2279 - hypothetical protein, at 987,347 to 988,549
GFF2279
Position (kb) 985
986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 984.717 kb on + strand, within GFF2276 at 984.718 kb on - strand, within GFF2276 at 984.769 kb on - strand, within GFF2276 at 984.943 kb on - strand at 984.943 kb on - strand at 985.033 kb on + strand, within GFF2277 at 985.034 kb on - strand, within GFF2277 at 985.052 kb on + strand, within GFF2277 at 985.052 kb on + strand, within GFF2277 at 985.053 kb on - strand, within GFF2277 at 985.073 kb on - strand, within GFF2277 at 985.181 kb on - strand, within GFF2277 at 985.342 kb on + strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.343 kb on - strand, within GFF2277 at 985.354 kb on + strand, within GFF2277 at 985.354 kb on + strand, within GFF2277 at 985.355 kb on - strand, within GFF2277 at 985.701 kb on + strand, within GFF2278 at 985.701 kb on + strand, within GFF2278 at 985.702 kb on - strand, within GFF2278 at 985.702 kb on - strand, within GFF2278 at 985.809 kb on + strand, within GFF2278 at 985.975 kb on - strand, within GFF2278 at 986.187 kb on + strand, within GFF2278 at 986.188 kb on - strand, within GFF2278 at 986.188 kb on - strand, within GFF2278 at 986.387 kb on - strand, within GFF2278 at 986.387 kb on - strand, within GFF2278 at 986.389 kb on - strand, within GFF2278 at 986.521 kb on - strand, within GFF2278 at 986.635 kb on + strand, within GFF2278 at 986.636 kb on - strand, within GFF2278 at 986.636 kb on - strand, within GFF2278 at 986.693 kb on - strand, within GFF2278 at 986.763 kb on + strand, within GFF2278 at 986.764 kb on - strand, within GFF2278 at 986.904 kb on + strand, within GFF2278 at 986.904 kb on + strand, within GFF2278 at 986.934 kb on + strand, within GFF2278 at 987.180 kb on + strand at 987.180 kb on + strand at 987.181 kb on - strand at 987.283 kb on + strand at 987.284 kb on - strand at 987.933 kb on + strand, within GFF2279
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 984,717 + GFF2276 0.69 +0.0 984,718 - GFF2276 0.69 -0.9 984,769 - GFF2276 0.75 -0.3 984,943 - +0.6 984,943 - +0.6 985,033 + GFF2277 0.12 -1.1 985,034 - GFF2277 0.12 -0.0 985,052 + GFF2277 0.16 +2.1 985,052 + GFF2277 0.16 +0.9 985,053 - GFF2277 0.16 -0.4 985,073 - GFF2277 0.21 -0.0 985,181 - GFF2277 0.45 +0.2 985,342 + GFF2277 0.81 +0.5 985,343 - GFF2277 0.81 +0.8 985,343 - GFF2277 0.81 +0.3 985,343 - GFF2277 0.81 +1.3 985,343 - GFF2277 0.81 +0.7 985,354 + GFF2277 0.83 +0.1 985,354 + GFF2277 0.83 -1.8 985,355 - GFF2277 0.84 -0.5 985,701 + GFF2278 0.15 -1.7 985,701 + GFF2278 0.15 -1.2 985,702 - GFF2278 0.15 -1.6 985,702 - GFF2278 0.15 +0.1 985,809 + GFF2278 0.21 -1.7 985,975 - GFF2278 0.31 -1.1 986,187 + GFF2278 0.43 -2.0 986,188 - GFF2278 0.44 -1.7 986,188 - GFF2278 0.44 -1.6 986,387 - GFF2278 0.55 -0.9 986,387 - GFF2278 0.55 +0.4 986,389 - GFF2278 0.55 -1.6 986,521 - GFF2278 0.63 -2.2 986,635 + GFF2278 0.70 -1.2 986,636 - GFF2278 0.70 -1.7 986,636 - GFF2278 0.70 -0.2 986,693 - GFF2278 0.73 -2.1 986,763 + GFF2278 0.78 -1.2 986,764 - GFF2278 0.78 -1.9 986,904 + GFF2278 0.86 -1.8 986,904 + GFF2278 0.86 -3.1 986,934 + GFF2278 0.88 -1.2 987,180 + +0.9 987,180 + +0.3 987,181 - -0.6 987,283 + -0.4 987,284 - -2.0 987,933 + GFF2279 0.49 +0.9
Or see this region's nucleotide sequence