Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2267 and GFF2268 are separated by 103 nucleotides GFF2268 and GFF2269 are separated by 101 nucleotides GFF2269 and GFF2270 are separated by 35 nucleotides GFF2270 and GFF2271 are separated by 166 nucleotides
GFF2267 - Phosphoenolpyruvate carboxylase, at 976,766 to 979,546
GFF2267
GFF2268 - hypothetical protein, at 979,650 to 980,600
GFF2268
GFF2269 - hypothetical protein, at 980,702 to 981,040
GFF2269
GFF2270 - hypothetical protein, at 981,076 to 981,348
GFF2270
GFF2271 - Prolyl-tRNA editing protein ProX, at 981,515 to 982,024
GFF2271
Position (kb) 979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 978.661 kb on - strand, within GFF2267 at 978.858 kb on + strand, within GFF2267 at 978.858 kb on + strand, within GFF2267 at 978.858 kb on + strand, within GFF2267 at 978.859 kb on - strand, within GFF2267 at 978.864 kb on + strand, within GFF2267 at 978.867 kb on + strand, within GFF2267 at 979.170 kb on + strand, within GFF2267 at 979.171 kb on - strand, within GFF2267 at 979.291 kb on + strand at 979.597 kb on + strand at 979.597 kb on + strand at 979.604 kb on - strand at 979.902 kb on + strand, within GFF2268 at 979.902 kb on + strand, within GFF2268 at 980.191 kb on + strand, within GFF2268 at 980.323 kb on + strand, within GFF2268 at 980.395 kb on + strand, within GFF2268 at 980.606 kb on + strand at 980.609 kb on - strand at 980.684 kb on - strand at 980.807 kb on + strand, within GFF2269 at 980.807 kb on + strand, within GFF2269 at 980.808 kb on - strand, within GFF2269 at 980.937 kb on + strand, within GFF2269 at 980.938 kb on - strand, within GFF2269 at 981.193 kb on + strand, within GFF2270 at 981.479 kb on - strand at 981.479 kb on - strand at 981.479 kb on - strand at 981.578 kb on + strand, within GFF2271 at 981.579 kb on - strand, within GFF2271 at 981.579 kb on - strand, within GFF2271
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 978,661 - GFF2267 0.68 -0.6 978,858 + GFF2267 0.75 -1.3 978,858 + GFF2267 0.75 -0.7 978,858 + GFF2267 0.75 -1.9 978,859 - GFF2267 0.75 -1.2 978,864 + GFF2267 0.75 +0.6 978,867 + GFF2267 0.76 -0.7 979,170 + GFF2267 0.86 -2.8 979,171 - GFF2267 0.86 -3.0 979,291 + -1.4 979,597 + -1.7 979,597 + -2.1 979,604 - -0.9 979,902 + GFF2268 0.26 -0.4 979,902 + GFF2268 0.26 -1.9 980,191 + GFF2268 0.57 -0.0 980,323 + GFF2268 0.71 -0.1 980,395 + GFF2268 0.78 -1.2 980,606 + +0.1 980,609 - +0.5 980,684 - -0.8 980,807 + GFF2269 0.31 +0.4 980,807 + GFF2269 0.31 +1.4 980,808 - GFF2269 0.31 -1.8 980,937 + GFF2269 0.69 -0.4 980,938 - GFF2269 0.70 +0.3 981,193 + GFF2270 0.43 +1.1 981,479 - -1.2 981,479 - -0.4 981,479 - +0.4 981,578 + GFF2271 0.12 -0.6 981,579 - GFF2271 0.13 -0.7 981,579 - GFF2271 0.13 +0.5
Or see this region's nucleotide sequence