Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2250 and GFF2251 are separated by 55 nucleotides GFF2251 and GFF2252 are separated by 18 nucleotides GFF2252 and GFF2253 are separated by 6 nucleotides
GFF2250 - hypothetical protein, at 954,619 to 955,737
GFF2250
GFF2251 - Peptidyl-tRNA hydrolase ArfB, at 955,793 to 956,215
GFF2251
GFF2252 - DNA repair protein RecN, at 956,234 to 957,916
GFF2252
GFF2253 - Outer membrane protein assembly factor BamD, at 957,923 to 958,807
GFF2253
Position (kb) 956
957
958 Strain fitness (log2 ratio) -1
0
1
2 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.693 kb on + strand at 955.694 kb on - strand at 955.766 kb on + strand at 955.766 kb on + strand at 955.766 kb on + strand at 955.767 kb on - strand at 955.767 kb on - strand at 955.767 kb on - strand at 956.976 kb on + strand, within GFF2252 at 956.976 kb on + strand, within GFF2252 at 956.976 kb on + strand, within GFF2252
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 955,361 - GFF2250 0.66 -0.2 955,361 - GFF2250 0.66 -1.6 955,361 - GFF2250 0.66 -0.2 955,361 - GFF2250 0.66 +0.2 955,361 - GFF2250 0.66 +0.7 955,361 - GFF2250 0.66 +0.5 955,693 + +0.6 955,694 - -0.7 955,766 + -0.0 955,766 + +0.4 955,766 + -0.4 955,767 - +0.3 955,767 - -0.4 955,767 - +0.6 956,976 + GFF2252 0.44 +0.3 956,976 + GFF2252 0.44 +0.3 956,976 + GFF2252 0.44 +1.9
Or see this region's nucleotide sequence