Strain Fitness in Xanthobacter sp. DMC5 around GFF2247

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2245 and GFF2246 are separated by 124 nucleotidesGFF2246 and GFF2247 are separated by 6 nucleotidesGFF2247 and GFF2248 are separated by 144 nucleotides GFF2245 - Glutathione synthetase, at 949,796 to 950,761 GFF2245 GFF2246 - hypothetical protein, at 950,886 to 951,197 GFF2246 GFF2247 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 951,204 to 951,986 GFF2247 GFF2248 - Competence protein ComM, at 952,131 to 953,663 GFF2248 Position (kb) 951 952Strain fitness (log2 ratio) -1 0 1at 950.775 kb on - strandat 950.871 kb on + strandat 950.871 kb on + strandat 950.872 kb on - strandat 950.872 kb on - strandat 950.872 kb on - strandat 951.195 kb on + strandat 951.448 kb on + strand, within GFF2247at 951.449 kb on - strand, within GFF2247at 951.449 kb on - strand, within GFF2247at 951.757 kb on + strand, within GFF2247at 951.910 kb on + strandat 951.910 kb on + strandat 951.911 kb on - strandat 951.911 kb on - strandat 952.011 kb on + strandat 952.011 kb on + strandat 952.011 kb on + strandat 952.012 kb on - strandat 952.369 kb on - strand, within GFF2248

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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950,775 - +1.1
950,871 + -0.3
950,871 + -0.8
950,872 - -1.4
950,872 - +0.7
950,872 - -0.3
951,195 + +0.3
951,448 + GFF2247 0.31 +1.3
951,449 - GFF2247 0.31 +0.8
951,449 - GFF2247 0.31 +0.1
951,757 + GFF2247 0.71 +0.2
951,910 + -1.6
951,910 + +0.2
951,911 - -1.0
951,911 - -1.2
952,011 + +0.7
952,011 + -1.1
952,011 + +0.7
952,012 - -0.9
952,369 - GFF2248 0.16 +1.7

Or see this region's nucleotide sequence