Strain Fitness in Xanthobacter sp. DMC5 around GFF220

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF219 and GFF220 are separated by 537 nucleotidesGFF220 and GFF221 are separated by 94 nucleotides GFF219 - Protein phosphotransferase ChpT, at 229,934 to 230,587 GFF219 GFF220 - hypothetical protein, at 231,125 to 231,586 GFF220 GFF221 - Cell cycle response regulator CtrA, at 231,681 to 232,382 GFF221 Position (kb) 231 232Strain fitness (log2 ratio) -1 0 1at 230.591 kb on + strandat 230.591 kb on + strandat 230.812 kb on - strandat 231.105 kb on + strandat 231.106 kb on - strandat 231.106 kb on - strandat 231.106 kb on - strandat 231.536 kb on - strand, within GFF220

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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230,591 + +0.1
230,591 + -0.1
230,812 - -0.4
231,105 + +0.4
231,106 - -1.4
231,106 - +0.3
231,106 - -0.9
231,536 - GFF220 0.89 -0.3

Or see this region's nucleotide sequence