Strain Fitness in Xanthobacter sp. DMC5 around GFF2177

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2176 and GFF2177 overlap by 4 nucleotidesGFF2177 and GFF2178 are separated by 134 nucleotides GFF2176 - L-lactate dehydrogenase, at 875,451 to 876,626 GFF2176 GFF2177 - Putative L-lactate dehydrogenase operon regulatory protein, at 876,623 to 877,381 GFF2177 GFF2178 - hypothetical protein, at 877,516 to 878,439 GFF2178 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.626 kb on + strand, within GFF2176at 875.627 kb on - strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 876.049 kb on + strand, within GFF2176at 876.049 kb on + strand, within GFF2176at 876.241 kb on + strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.539 kb on - strandat 876.539 kb on - strandat 876.539 kb on - strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.602 kb on - strandat 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.922 kb on + strand, within GFF2177at 876.923 kb on - strand, within GFF2177at 877.119 kb on + strand, within GFF2177at 877.120 kb on - strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.408 kb on + strandat 877.432 kb on - strandat 877.543 kb on - strandat 877.661 kb on + strand, within GFF2178at 877.661 kb on + strand, within GFF2178at 877.661 kb on + strand, within GFF2178at 877.700 kb on + strand, within GFF2178at 877.700 kb on + strand, within GFF2178at 877.701 kb on - strand, within GFF2178at 877.701 kb on - strand, within GFF2178at 877.875 kb on + strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.878 kb on - strand, within GFF2178at 877.878 kb on - strand, within GFF2178at 878.144 kb on + strand, within GFF2178at 878.144 kb on + strand, within GFF2178at 878.325 kb on - strand, within GFF2178at 878.348 kb on + strandat 878.348 kb on + strandat 878.349 kb on - strandat 878.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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875,626 + GFF2176 0.15 +1.1
875,627 - GFF2176 0.15 +0.6
875,968 + GFF2176 0.44 +0.8
875,968 + GFF2176 0.44 +0.3
875,968 + GFF2176 0.44 +0.6
875,968 + GFF2176 0.44 -0.2
875,968 + GFF2176 0.44 -0.5
875,969 - GFF2176 0.44 -0.8
875,969 - GFF2176 0.44 -0.9
875,969 - GFF2176 0.44 +1.1
875,969 - GFF2176 0.44 -0.4
876,049 + GFF2176 0.51 +0.1
876,049 + GFF2176 0.51 +0.4
876,241 + GFF2176 0.67 -0.3
876,242 - GFF2176 0.67 +0.8
876,242 - GFF2176 0.67 -0.6
876,242 - GFF2176 0.67 +0.7
876,242 - GFF2176 0.67 -0.2
876,539 - -1.0
876,539 - +0.2
876,539 - -1.5
876,556 + -0.6
876,556 + -1.2
876,556 + -0.0
876,556 + -1.2
876,557 - +0.1
876,557 - +0.2
876,557 - -0.1
876,602 - +0.8
876,843 + GFF2177 0.29 -0.6
876,843 + GFF2177 0.29 -0.6
876,843 + GFF2177 0.29 +0.2
876,843 + GFF2177 0.29 -3.6
876,843 + GFF2177 0.29 +0.6
876,844 - GFF2177 0.29 -0.9
876,844 - GFF2177 0.29 -1.0
876,844 - GFF2177 0.29 -1.7
876,922 + GFF2177 0.39 +0.9
876,923 - GFF2177 0.40 -2.3
877,119 + GFF2177 0.65 -0.4
877,120 - GFF2177 0.65 +0.3
877,197 + GFF2177 0.76 -0.3
877,197 + GFF2177 0.76 -1.0
877,197 + GFF2177 0.76 -0.7
877,197 + GFF2177 0.76 +0.0
877,197 + GFF2177 0.76 -0.2
877,197 + GFF2177 0.76 +0.4
877,197 + GFF2177 0.76 +0.3
877,197 + GFF2177 0.76 +0.1
877,198 - GFF2177 0.76 +0.3
877,198 - GFF2177 0.76 +1.3
877,198 - GFF2177 0.76 -0.2
877,198 - GFF2177 0.76 +0.1
877,408 + +0.1
877,432 - +0.8
877,543 - -0.6
877,661 + GFF2178 0.16 +0.6
877,661 + GFF2178 0.16 -0.7
877,661 + GFF2178 0.16 +0.1
877,700 + GFF2178 0.20 +0.0
877,700 + GFF2178 0.20 +0.8
877,701 - GFF2178 0.20 +1.4
877,701 - GFF2178 0.20 +1.0
877,875 + GFF2178 0.39 +0.8
877,876 - GFF2178 0.39 +0.0
877,876 - GFF2178 0.39 -0.5
877,876 - GFF2178 0.39 +0.4
877,877 + GFF2178 0.39 -0.2
877,877 + GFF2178 0.39 +1.9
877,877 + GFF2178 0.39 -0.5
877,877 + GFF2178 0.39 -1.8
877,877 + GFF2178 0.39 +0.7
877,877 + GFF2178 0.39 +0.4
877,878 - GFF2178 0.39 -0.5
877,878 - GFF2178 0.39 -0.2
878,144 + GFF2178 0.68 +0.5
878,144 + GFF2178 0.68 -1.4
878,325 - GFF2178 0.88 -0.8
878,348 + -0.4
878,348 + +0.1
878,349 - -0.0
878,349 - +0.2

Or see this region's nucleotide sequence