Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2160 and GFF2161 overlap by 4 nucleotides GFF2161 and GFF2162 are separated by 272 nucleotides
GFF2160 - Adaptive-response sensory-kinase SasA, at 852,872 to 854,311
GFF2160
GFF2161 - Transcriptional regulatory protein OmpR, at 854,308 to 855,027
GFF2161
GFF2162 - hypothetical protein, at 855,300 to 857,513
GFF2162
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1 at 853.976 kb on + strand, within GFF2160 at 853.977 kb on - strand, within GFF2160 at 854.002 kb on + strand, within GFF2160 at 854.343 kb on - strand at 854.343 kb on - strand at 854.343 kb on - strand at 854.424 kb on + strand, within GFF2161 at 854.424 kb on + strand, within GFF2161 at 854.424 kb on + strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.425 kb on - strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.428 kb on + strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.429 kb on - strand, within GFF2161 at 854.621 kb on + strand, within GFF2161 at 854.726 kb on + strand, within GFF2161 at 854.726 kb on + strand, within GFF2161 at 854.727 kb on - strand, within GFF2161 at 854.727 kb on - strand, within GFF2161 at 854.961 kb on - strand at 855.028 kb on - strand at 855.028 kb on - strand at 855.134 kb on + strand at 855.135 kb on - strand at 855.145 kb on - strand at 855.173 kb on + strand at 855.373 kb on - strand at 855.526 kb on + strand, within GFF2162 at 855.526 kb on + strand, within GFF2162 at 855.526 kb on + strand, within GFF2162 at 855.526 kb on + strand, within GFF2162 at 855.527 kb on - strand, within GFF2162 at 855.529 kb on + strand, within GFF2162 at 855.529 kb on + strand, within GFF2162
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 853,976 + GFF2160 0.77 -0.7 853,977 - GFF2160 0.77 -0.5 854,002 + GFF2160 0.78 -1.2 854,343 - -0.7 854,343 - +0.7 854,343 - -0.9 854,424 + GFF2161 0.16 -0.3 854,424 + GFF2161 0.16 -0.8 854,424 + GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 -0.4 854,425 - GFF2161 0.16 +0.5 854,428 + GFF2161 0.17 -0.4 854,428 + GFF2161 0.17 +0.1 854,428 + GFF2161 0.17 -0.1 854,428 + GFF2161 0.17 -0.1 854,429 - GFF2161 0.17 -0.7 854,429 - GFF2161 0.17 -0.2 854,429 - GFF2161 0.17 -0.0 854,621 + GFF2161 0.43 -2.1 854,726 + GFF2161 0.58 +0.8 854,726 + GFF2161 0.58 +0.1 854,727 - GFF2161 0.58 -2.0 854,727 - GFF2161 0.58 -0.9 854,961 - +0.2 855,028 - +0.7 855,028 - +0.9 855,134 + -0.3 855,135 - -0.8 855,145 - -1.0 855,173 + -0.7 855,373 - -0.3 855,526 + GFF2162 0.10 -1.3 855,526 + GFF2162 0.10 -0.4 855,526 + GFF2162 0.10 +0.2 855,526 + GFF2162 0.10 -0.3 855,527 - GFF2162 0.10 -0.2 855,529 + GFF2162 0.10 +0.5 855,529 + GFF2162 0.10 +0.7
Or see this region's nucleotide sequence